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研究生: 蔡耀宗
Tsai, Yao-Tsung
論文名稱: 篩選及分析galectin-1 aptamer以做為口腔癌診斷與治療之應用
Selection and Characterization of Galectin-1 Aptamer for Oral Cancer Therapeutic Diagnostic Application
指導教授: 陳玉玲
Chen, Yuh-Ling
洪澤民
Hong, Tse-Ming
學位類別: 碩士
Master
系所名稱: 醫學院 - 口腔醫學研究所
Institute of Oral Medicine
論文出版年: 2011
畢業學年度: 99
語文別: 中文
論文頁數: 54
中文關鍵詞: 核酸適體半乳糖凝集素-1口腔癌
外文關鍵詞: aptamer, galectin-1, SELEX, oral cancer
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  • Aptamer是一種短片段單股的DNA、RNA或胜肽分子,利用其形成二級結構的特性,可以專一性的與蛋白質的特定位置做鍵結,而對蛋白質的功能造成影響,並且可以透過專一性aptamer來研究蛋白質的功能、交互作用,具有類似抗體的功能。Galectin-1是一種具有carbohydrate recognition domains(Earl et al.)可與細胞表面之β-galactosides結合,屬於lectin家族之一。galectin-1對於生長調節、腫瘤形成、免疫、以及細胞貼附、移動扮演一個重要的角色。本實驗室先前的研究即指出,galectin-1能增進口腔癌細胞的增生、貼附與移動。動物實驗方面也發現到,galectin-1基因剔除小鼠可延緩口腔癌前病變及口腔癌的形成。因此本研究希望篩選出專一性的galectin-1 DNA aptamers,以改善口腔癌診斷與治療。目前我們已經利用重組galectin-1從隨機的DNA aptamer序列庫中去篩選特定的aptamer,並經由PCR放大後重複篩選。經由反覆的篩選得到了一些有潛力的aptamer,透過多重序列比對的方式去分析這些經過篩選的核酸適體。挑選出有興趣的產物之後,進一步利用了即時定量PCR (real-time PCR)確認aptamer對於galectin-1蛋白親和力。根據結合能力測試,選定了具有高親和力的AP-27、AP-39、AP-74進行PCR及化學合成。針對galectin-1本身及其對於細胞的生理功能,我們測試了血球凝集實驗,初步發現三個候選aptamer並沒有明顯的抑制galectin-1的血球凝集活性。而在aptamer是否影響galectin-1對於口腔癌細胞OC2的貼附實驗,我們驗證了AP-27與AP-39能有效的抑制galectin-1所促進的OC2細胞貼附,而在OC2細胞移行實驗中,我們亦發現aptamer能抑制OC2細胞移行。綜合以上所述,本研究利用重組蛋白SELEX篩選出galectin-1專一性aptamer,並發現能有效抑制OC2細胞的貼附及移行。

    Aptamer is a short DNA or RNA fragment that can form complex secondary structure to confer high degree of specificity for its target molecule. According to this property, aptamer can bind to the specific site of proteins and affect the function of proteins. Galectin-1 is one of the lectin families with carbohydrate recognition domains (CRD) which can bind to β-galactosides. In previous studies, galectin-1 play an important role in growth regulation, tumorigenesis, cell adhesion, and migration. Our group had shown that galectin-1 can promote proliferation, adhesion, and migration in oral cancer cell. On the other hand, galectin-1 knockout can delay the development of oral leukoplakia and formation of oral cancer. Thereby, we want to select galectin-1 specific aptamers to improve diagnosis and therapy of oral cancer. We used galectin-1 to select aptamer from random library and amplified the aptamer product by PCR previously. Then, we analysis the aptamer candidates by multiple alignment, and amplify the aptamer candidates by PCR. After getting the aptamer product, we analyze the binding affinity by real-time PCR. According to qPCR binding assay, AP-27, AP-39, and AP-74 may be potential aptamers that targeting galectin-1. We confirm the function of those aptamers by hemoagglutination assay, adhesion and migration assay at oral cancer cell lines. In hemoagglutination assay, we found that AP-39 and AP-74 inhibit hemoagglutination slightly. In cell functional assay, AP-27, and AP-39 dose-dependently block galectin-1 promoted OC2 cells adhesion. On other hand, we also found these three aptamer candidates inhibit galectin-1 promoted OC2 cell migration.

    中文摘要 I 英文摘要 III 誌謝 V 目錄 VII 圖目錄 IX 緒論 1 口腔癌(Oral Cancer) 1 核酸適體(Aptamer) 1 Galectin-1 3 以Galectin-1為目標篩選aptamer之策略與效果 5 研究動機 7 材料與方法 8 Galectin-1蛋白質之純化 8 1-1 大量表現重組Galectin-1 8 1-2 親合性膠體純化重組Galectin-1蛋白質(TALON Resin) 9 1-3 陰離子交換樹脂管柱純化重組Galectin-1蛋白質(FPLC) 10 SELEX (Systematic Evolution of Ligands by Exponential Enrichment) 11 利用Galectin-1篩選核酸分子庫 11 聚合脢連鎖反應(Polymerase Chain Reaction, PCR) 13 洋菜膠體電泳分析(Agarose gel electrophoresis) 14 分離純化單股核酸(single strand DNA isolation) 15 利用TA轉殖技術建構aptamer質體 16 TA質體之建構與E-coli轉殖技術 16 Aptamer序列比對與結構分析 17 利用即時定量聚合酶鏈鎖反應進行aptamer親合力檢測 18 即時定量聚合酶鏈鎖反應(Real-time PCR) 18 Aptamer與Galectin-1鍵結能力實驗 19 血球凝集試驗 (Hemagglutination assay) 20 細胞移行實驗 (Migration assay) 21 細胞貼附實驗 (Cell adhesion assay) 22 實驗結果 24 Galectin-1蛋白質的表現與純化 24 利用SELEX方法來篩選對於galectin-1蛋白之專一性aptamer (Systematic Evolution of Ligands by Exponential Enrixhment) 25 利用TA轉殖載體定序並分析aptamer序列 26 利用即時定量PCR (Real-time PCR)進行aptamer親和力分析 27 利用血球凝集試驗初步測試aptamer能否抑制galectin-1活性 27 Galectin-1 aptamer影響gal-1所促進的OC2細胞貼附 28 Aptamer抑制galectin-1所促進的口腔癌細胞移行 29 討論 31 參考文獻 37 附錄一:儀器 51 附錄二:英文縮寫檢索表 52 自述 54

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