| 研究生: |
張宜婷 Chang, Yi-Ting |
|---|---|
| 論文名稱: |
橙黃壺菌 BL10 基因轉殖平台的改良 Optimization of the transformation conditions for Aurantiochytrium strain BL10 |
| 指導教授: |
陳逸民
Chen, Yi-Min |
| 學位類別: |
碩士 Master |
| 系所名稱: |
生物科學與科技學院 - 生物科技與產業科學系 Department of Biotechnology and Bioindustry Sciences |
| 論文出版年: | 2021 |
| 畢業學年度: | 109 |
| 語文別: | 中文 |
| 論文頁數: | 96 |
| 中文關鍵詞: | 橙黃壺菌 BL10 、游離基因體 、基因轉殖 |
| 外文關鍵詞: | Aurantiochytrium sp. BL10, genetic transformation, episome |
| 相關次數: | 點閱:179 下載:0 |
| 分享至: |
| 查詢本校圖書館目錄 查詢臺灣博碩士論文知識加值系統 勘誤回報 |
本研究旨在建立BL10的insertion及episome基因轉殖法。前者是在原有線狀constructs基礎上進行簡化,並更換啟動子及 (或) selectable marker,製作出8種分別以neo及aphVIII為selectable marker的線狀constructs後,搭配電穿孔法及抗生素抗性篩選,進行轉殖效率的評估。後者則是使用含有酵母菌維持序列CEN6-ARSH4-HIS3 (CAH) 片段的環狀construct進行基因轉殖後,對所得轉殖株進行stability maintenance assay,分別培養於有無抗生素的環境中,觀察環狀轉殖株是否會在無篩選壓力條件下喪失抗性,藉以觀測episome的存在與否。
實驗結果表明,(1) 利用線狀constructs能夠成功轉殖並篩選到stable clones,且能夠通過PCR偵測到外源基因訊號。含aphVIII的線狀constructs轉殖效率優於含neo者,其中又以含BL10 ubiquitin啟動子之UAG1效率最高,說明 aphVIII更適合作為selectable marker被應用於BL10的基因轉殖中。(2) 將來自線狀construct E2NG1及環狀construct pP2NG-CAH-18S轉殖的stable clones經過2代的無抗生素培養後,部分環狀轉殖株維持率相較於線狀轉殖株顯著低下,說明外源基因可能以episome形式游離存在於環狀轉殖株中,推測CAH序列或有助於環狀construct形成episome。本研究為日後BL10之基因工程以及基因功能相關研究提供優良基礎。
This study sought to establish methods for the transformation of BL10, including genome insertion and episome maintenance. The original linear constructs were optimized for the former by replacing the promoter and/or selectable marker. Eight linear constructs with neo or aphVIII as the selectable marker were constructed. Transformation efficiency was evaluated after electroporation and antibiotic resistance screening. As for episome maintenance, a circular construct containing yeast-maintenance-sequence CEN6-ARSH4-HIS3 (CAH) element was delivered to BL10 via electroporation. A stability maintenance experiment was performed on the transformants, involving cultivation with or without antibiotics. The presence of episome was detected by measuring the difference in resistance maintenance rates between transformants derived from linear or circular constructions. Our results revealed that stable clones could be obtained via transformation using linear constructs, and foreign gene signals could be detected by PCR. Linear constructs containing aphVIII presented higher efficiency than those containing neo, and UAG1 containing BL10 ubiquitin promoter was the most efficient. This indicates that aphVIII as a selectable marker, is well suited to the transformation of BL10. We also determined that after two generations of cultivation without selection, the maintenance rate of some circular construct strains was significantly lower than that of linear construct strains, which suggests that the circular construct may exist as an episome in corresponding transformants, due to the contribution of the CAH fragment. This study provides a basis for future genetic engineering and gene function studies of BL10.
王嘉慧,藉由 RNA 干擾、蛋白合成抑制及突變株篩選改善橙黃壺菌 L-BL10 品系脂肪酸組成,國立成功大學生物科技研究所碩士論文,2013。
翁伯瑋,橙黃壺菌 L-BL10 品系之基因轉殖平台建立,國立成功大學生物科技研究所碩士論文,2014。
梁又方,建立可靠的方案以達成橙黃壺菌品系 BL10 之穩定基因轉殖,國立成功大學生物科技與產業科學系碩士論文,2018。
莊凱荃,培養條件對 Aurantiochytrium sp BL10 之 DHA 產量及脂肪酸組成的影響,國立成功大學生物科技研究所碩士論文,2011。
陳筠方,利用基因靜默法改善橙黃壺菌 BL10 品系之脂肪酸組成,國立成功大學生物科技研究所碩士論文,2015。
蘇昱銘,來自北台灣之海洋異營性微藻分離株: Aurantiochytrium sp strain BL10 之生物特性研究,國立成功大學生物科技研究所碩士論文,2012。
Aasen, I.M., Ertesvåg, H., Heggeset, T.M.B., Liu, B., Brautaset, T., Vadstein, O., and Ellingsen, T.E. Thraustochytrids as production organisms for docosahexaenoic acid (DHA), squalene, and carotenoids. Applied Microbiology and Biotechnology 100, 4309-4321, 2016.
Adachi, T., Sahara, T., Okuyama, H., and Morita, N. Glass bead-based genetic transformation: an efficient method for transformation of Thraustochytrid microorganisms. Journal of Oleo Science 66, 791-795, 2017.
Alhaji, S.Y., Ngai, S.C., and Abdullah, S. Silencing of transgene expression in mammalian cells by DNA methylation and histone modifications in gene therapy perspective. Biotechnology and Genetic Engineering Reviews 35, 1-25, 2019.
Anders, C., and Jinek, M. In vitro enzymology of Cas9. Methods in Enzymology 546, 1-20, 2014.
Azencott, H.R., Peter, G.F., and Prausnitz, M.R. Influence of the cell wall on intracellular delivery to algal cells by electroporation and sonication. Ultrasound in Medicine and Biology 33, 1805-1817, 2007.
Bergé, J.P., and Barnathan, G. Fatty acids from lipids of marine organisms: molecular biodiversity, roles as biomarkers, biologically active compounds, and economical aspects. Marine Biotechnology I, 49-125, 2005.
Cerutti, H., Johnson, A.M., Gillham, N.W., and Boynton, J.E. A eubacterial gene conferring spectinomycin resistance on Chlamydomonas reinhardtii: integration into the nuclear genome and gene expression. Genetics 145, 97-110, 1997.
Cerutti, H., Ma, X., Msanne, J., and Repas, T. RNA-mediated silencing in algae: biological roles and tools for analysis of gene function. Eukaryotic Cell 10, 1164-1172, 2011.
Cheng, R.B., Lin, X.Z., Wang, Z.K., Yang, S.J., Rong, H., and Ma, Y. Establishment of a transgene expression system for the marine microalga Schizochytrium by 18S rDNA-targeted homologous recombination. World Journal of Microbiology and Biotechnology 27, 737-741, 2011.
Cormack, B.P., Valdivia, R.H., and Falkow, S. FACS-optimized mutants of the green fluorescent protein (GFP). Gene 173, 33-38, 1996.
De Riso, V., Raniello, R., Maumus, F., Rogato, A., Bowler, C., and Falciatore, A. Gene silencing in the marine diatom Phaeodactylum tricornutum. Nucleic Acids Research 37, e96, 2009.
Diner, R.E., Bielinski, V.A., Dupont, C.L., Allen, A.E., and Weyman, P.D. Refinement of the diatom episome maintenance sequence and improvement of conjugation-based DNA delivery methods. Frontiers in Bioengineering and Biotechnology 4, 65, 2016.
Doron, L., Segal, N., and Shapira, M. Transgene expression in microalgae—from tools to applications. Frontiers in Plant Science 7, 505, 2016.
Economou, C., Wannathong, T., Szaub, J., and Purton, S. A simple, low-cost method for chloroplast transformation of the green alga Chlamydomonas reinhardtii. Chloroplast Biotechnology, Humana Press, Totowa. 401-411, 2014.
Gong, Y., Wan, X., Jiang, M., Hu, C., Hu, H., and Huang, F. Metabolic engineering of microorganisms to produce omega-3 very long-chain polyunsaturated fatty acids. Progress in Lipid Research 56, 19-35, 2014.
Hamilton, M.L., Warwick, J., Terry, A., Allen, M.J., Napier, J.A., and Sayanova, O. Towards the industrial production of omega-3 long chain polyunsaturated fatty acids from a genetically modified diatom Phaeodactylum tricornutum. PLoS One 10, e0144054, 2015.
Heitzer, M., and Zschoernig, B. Construction of modular tandem expression vectors for the green alga Chlamydomonas reinhardtii using the Cre/lox-system. BioTechniques 43, 324-332, 2007.
Ji, X.J., Mo, K.Q., Ren, L.J., Li, G.L., Huang, J.Z., and Huang, H. Genome sequence of Schizochytrium sp. CCTCC M209059, an effective producer of docosahexaenoic acid-rich lipids. Genome Announcements 3, e00819-15, 2015.
Karas, B.J., Diner, R.E., Lefebvre, S.C., McQuaid, J., Phillips, A.P., Noddings, C.M., Brunson, J.K., Valas, R.E., Deerinck, T.J., and Jablanovic, J. Designer diatom episomes delivered by bacterial conjugation. Nature Communications 6, 1-10, 2015.
Kaufman, W.L., Kocman, I., Agrawal, V., Rahn, H.P., Besser, D., and Gossen, M. Homogeneity and persistence of transgene expression by omitting antibiotic selection in cell line isolation. Nucleic Acids Research 36, e111, 2008.
Kilian, O., Benemann, C.S., Niyogi, K.K., and Vick, B. High-efficiency homologous recombination in the oil-producing alga Nannochloropsis sp. Proceedings of the National Academy of Sciences of the United States of America 108, 21265-21269, 2011.
Kim, S., Lee, Y.C., Cho, D.H., Lee, H.U., Huh, Y.S., Kim, G.J., and Kim, H.S. A simple and non-invasive method for nuclear transformation of intact-walled Chlamydomonas reinhardtii. PLoS One 9, e101018, 2014.
Kohli, A., González Melendi, P., Abranches, R., Capell, T., Stoger, E., and Christou, P. The quest to understand the basis and mechanisms that control expression of introduced transgenes in crop plants. Plant Signaling and Behavior 1, 185-195, 2006.
Kohli, A., Miro, B., and Twyman, R.M. Transgene integration, expression and stability in plants: strategies for improvements. Transgenic Crop Plants, Springer, Berlin, Heidelberg. 201-237. 2010.
Ladygin, V.G. Efficient transformation of mutant cells of Chlamydomonas reinhardtii by electroporation. Process Biochemistry 39, 1685-1691, 2004.
León Bañares, R., González Ballester, D., Galván, A., and Fernández, E. Transgenic microalgae as green cell-factories. Trends in Biotechnology 22, 45-52, 2004.
Leon, R., and Fernandez, E. Nuclear transformation of eukaryotic microalgae. Transgenic Microalgae as Green Cell Factories, 1-11, 2007.
Li, Z., and Bock, R. Replication of bacterial plasmids in the nucleus of the red alga Porphyridium purpureum. Nature Communications 9, 1-8, 2018.
Metz, J.G., Roessler, P., Facciotti, D., Levering, C., Dittrich, F., Lassner, M., Valentine, R., Lardizabal, K., Domergue, F., and Yamada, A. Production of polyunsaturated fatty acids by polyketide synthases in both prokaryotes and eukaryotes. Science 293, 290-293, 2001.
Meyer, P. Understanding and controlling transgene expression. Trends in Biotechnology 13, 332-337, 1995.
Olsen, Y. Resources for fish feed in future mariculture. Aquaculture Environment Interactions 1, 187-200, 2011.
Omura, S. The antibiotic cerulenin, a novel tool for biochemistry as an inhibitor of fatty acid synthesis. Bacteriological Reviews 40, 681-697, 1976.
Rajeev Kumar, S., Anunanthini, P., and Ramalingam, S. Epigenetic silencing in transgenic plants. Frontiers in Plant Science 6, 693, 2015.
Ratledge, C. Fatty acid biosynthesis in microorganisms being used for single cell oil production. Biochimie 86, 807-815, 2004.
Ratledge, C. Microbial oils: an introductory overview of current status and future prospects. Oilseeds and Fats, Crops and Lipids 20, D602, 2013.
Run, C., Fang, L., Fan, J., Fan, C., Luo, Y., Hu, Z., and Li, Y. Stable nuclear transformation of the industrial alga Chlorella pyrenoidosa. Algal Research 17, 196-201, 2016.
Sakaguchi, K., Matsuda, T., Kobayashi, T., Ohara, J., Hamaguchi, R., Abe, E., Nagano, N., Hayashi, M., Ueda, M., Honda, D., Okita, Y., Taoka, Y., Sugimoto, S., Okino, N., and Ito, M. Versatile transformation system that is applicable to both multiple transgene expression and gene targeting for Thraustochytrids. Applied and Environmental Microbiology 78, 3193-3202, 2012.
Schroda, M., Beck, C.F., and Vallon, O. Sequence elements within an HSP70 promoter counteract transcriptional transgene silencing in Chlamydomonas. Plant Journal 31, 445-455, 2002.
Schroda, M., Blöcker, D., and Beck, C.F. The HSP70A promoter as a tool for the improved expression of transgenes in Chlamydomonas. Plant Journal 21, 121-131, 2000.
Shin, S.E., Lim, J.M., Koh, H.G., Kim, E.K., Kang, N.K., Jeon, S., Kwon, S., Shin, W.S., Lee, B., and Hwangbo, K. CRISPR/Cas9-induced knockout and knock-in mutations in Chlamydomonas reinhardtii. Scientific Reports 6, 1-15, 2016.
Tsai, Y.Y., Ohashi, T., Kanazawa, T., Polburee, P., Misaki, R., Limtong, S., and Fujiyama, K. Development of a sufficient and effective procedure for transformation of an oleaginous yeast, Rhodosporidium toruloides DMKU3-TK16. Current Genetics 63, 359-371, 2017.
Watanabe, K., Perez, C.M.T., Kitahori, T., Hata, K., Aoi, M., Takahashi, H., Sakuma, T., Okamura, Y., Nakashimada, Y., and Yamamoto, T. Improvement of fatty acid productivity of thraustochytrid, Aurantiochytrium sp. by genome editing. Journal of Bioscience and Bioengineering 131, 373-380, 2021.
Yang, H.L., Lu, C.K., Chen, S.F., Chen, Y.M., and Chen, Y.M. Isolation and characterization of Taiwanese heterotrophic microalgae: screening of strains for docosahexaenoic acid (DHA) production. Marine Biotechnology 12, 173-185, 2010.
Ye, C., Qiao, W., Yu, X., Ji, X., Huang, H., Collier, J.L., and Liu, L. Reconstruction and analysis of the genome-scale metabolic model of Schizochytrium limacinum SR21 for docosahexaenoic acid production. Biomed Central Genomics 16, 1-11, 2015.
Zuo, Z., and Liu, J. Cas9-catalyzed DNA cleavage generates staggered ends: Evidence from molecular dynamics simulations. Scientific Reports 6, 1-9, 2016.