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研究生: 楊智凱
Yang, Chih-Kai
論文名稱: 探討C端區域在馬來腹蛇蛇毒蛋白中對於整合蛋白辨識所扮演的角色
The Role of C-terminal Region of Rhodostomin in the Recognition of Integrins
指導教授: 莊偉哲
Chuang, Woei-Jer
學位類別: 碩士
Master
系所名稱: 醫學院 - 生物化學暨分子生物學研究所
Department of Biochemistry and Molecular Biology
論文出版年: 2014
畢業學年度: 102
語文別: 中文
論文頁數: 99
中文關鍵詞: 馬來蝮蛇蛇毒蛋白C端區域選擇性整合蛋白去整合蛋白
外文關鍵詞: Rhodostomin, C-terminal region, selectivity, integrin, disintegrin
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  • 整合蛋白是由α和β兩個異質次單元所構成的穿膜蛋白,會調控細胞跟細胞以及細胞跟胞外間質之間的交互作用。其被發現參與在非常多生理反應中,像是血管新生、血栓、發炎以及骨質疏鬆等。因此,整合蛋白被視為具有潛力的治療標靶。去整合蛋白為含有RGD/KGD motif的蛇毒蛋白或生肽鏈的總稱,其對整合蛋白有高度的親和性而被視為有潛力的拮抗劑。而在過去的研究中發現,去整合蛋白的RGD motif附近區域以及C端區域對於辨識整合蛋白的活性及選擇性扮演著重要的角色。因此在本篇研究中,我們利用馬來蝮蛇毒液粹取出的蛇毒蛋白Rhodostomin(Rho)做為模式蛋白探討去整合蛋白C端序列對於整合蛋白的辨識所扮演的角色。Rho為去整合蛋白,來源是馬來蝮蛇,含有六段雙硫鍵,且具有一個PRGDMP motif以及一個PRYH的C端區域。而在我的研究中,主要利用三種策略分別探討C端的重要性:(1)利用wild type的Rho對其C端區域PRYH分別進行alanine scanning的分析。(2)利用對αIIbβ3低親和力的突變株39KKARTICARGRGDNP,將其C端區域以-65PRWNDL, -65PRNRFH, -65PRNPFHA, -65PRNPWNG, -65PRNGLYG, -65PGLYG, -65PGLY and -65PGYH 這些C端保守序列進行置換。(3)利用 39KKARTICARGRGDNP-65PXLYG以不同性質的胺基酸P、Y、R、K、D和E進行置換。首先,我成功的利用P. pastoris系統表現並純化出18個不同的突變蛋白。在第一個策略的細胞黏著實驗中發現,P65A、R66A和Y67A分別對α5β1、αIIbβ3和αvβ6的抑制能力有2.4、5.5和3.3倍的下降。另外,在39KKARTICARGRGDNP-65PXLYG的細胞黏著實驗中發現,R66G、R66P、R66Y、R66D及R66E對αIIbβ3的細胞黏著實驗中,有2~16.4倍的抑制能力的下降,而R66K則保留了對於αIIbβ3的抑制能力。由此可知,在第66位點對於αIIbβ3辨識上,帶正電的胺基酸會有較大的親和力,而帶負電的胺基酸則會降低親和力。而由結果也指出,R66對於C端區域在辨識整合蛋白αIIbβ3上扮演關鍵的角色。而在我的研究中也成功地設計出對於αvβ3及α5β1具有專一性的突變株39KKARTICARGRGDNP-65PDLYG,其對於αvβ3, α5β1, αvβ5, αvβ6, and αIIbβ3的IC50值分別為6.6, 15.4, 833.7, 1996.2, and > 450958.0 nM (12%)。將可作為對αvβ3、αvβ5、αvβ6和α5β1設計拮抗劑,作為設計未來設計藥物的基礎。

    Integrin are α/β heterodimeric transmembrane proteins that mediate cell to cell and cell to extracellular matrix interactions. They are involved in many biological processes and serve as important therapeutic targets. Disintegrins are a family of snake venom proteins containing an Arg- Gly-Asp (RGD) motif and have high affinity to integrins. It has been shown that the RGD loop and C-terminal region of disintegrins are important for their activity and selectivity. Rhodostomin (Rho) is a snake venom protein isolated from Calloselasma rhodostoma and contains 68 amino acid residues with a 48PRGDMP motif and 65PRYH C-terminal tail. In this study I used Rho as the protein scaffold to study the effect of C-terminal region on their integrin binding affinities and selectivity. I have successfully expressed three types of Rho C-terminal mutants. The cell adhesion analysis and alanine scanning of 65PRYH region of Rho showed that the activities of P65A, R66A, and Y67A mutants had 2.4-, 5.5-, and 3.3-fold decreases in inhibiting integrins α5β1, αIIbβ3, and αvβ6. The analysis of the 39KKARTICARGRGDNP-65PXLYG mutants also showed that the R66G, R66P, R66Y, R66D and R66E mutants exhibited 2.0-16.4-fold decreases in inhibiting integrin αIIbβ3; however, the R66K mutant retained similar activity in inhibiting integrin αIIbβ3. I also found that 39KKARTICARGRGDNP-65PDLYG mutant was integrins αvβ3 and α5β1-specific disintegrin. These findings showed that C-terminal region of Rho is important for the recognition of integrins, and integrin αIIbβ3 preferred positively charged R and K residues but not negatively charged D and E residues at the 66 position of Rho.

    目錄 中文摘要 I Extended Abstract III 誌謝 VIII 目錄 IX 表目錄 XI 圖目錄 XII 附錄表目錄 XIII 附錄圖目錄 XIV 縮寫檢索表 XV 儀器 XVI 第一章 緒論 1 1-1 背景資料 1 1-1-1 整合蛋白(Integrin)的介紹 1 1-1-2 整合蛋白與相關疾病 3 1-1-3 蛇毒蛋白與去整合蛋白(disintegrin)之介紹 5 1-1-4 馬來蝮蛇去整合蛋白(Rhodostomin; 簡稱Rho)之介紹 7 1-1-5整合蛋白及其RGD受質之相關研究以及應用 8 第二章 研究目標與策略 12 第三章 材料與方法 15 3-1 Rho與突變株重組蛋白之製備 15 3-1-1 實驗菌株、質體和培養基配方 15 3-1-2 重組基因之建構 17 3-1-3 重組蛋白之表現與純化 20 3-1-4 重組蛋白之質譜鑑定 25 3-2 Rho與突變株重組蛋白抑制血小板凝集功能之研究 26 3-2-1 血小板之製備 27 3-3 細胞株及培養方法 28 3-3-1 細胞培養 28 3-4 Rhodostomin與突變株重組蛋白抑制細胞黏著之研究 32 3-4-1 ECM之製備 32 3-4-2 突變株重組蛋白抑制細胞黏著之分析 38 3-5 分子模擬接合 (Molecular docking) 39 3-5-1 Rho與整合蛋白IIb3的分子模擬接合 39 第四章 結果 41 4-1 Rhodostomin以及C端突變蛋白的製備和鑑定 41 4-2 C端突變蛋白對於抑制血小板凝集的結果 42 4-3 C端突變蛋白抑制細胞黏著的結果 43 4-3-1 細胞黏著實驗條件 43 4-3-2 Rho的C端alanine scanning對整合蛋白黏著的影響 45 4-3-3 Rho的突變蛋白39KKART-46ARGRGDNP接上不同去整合蛋白的C端保守序列對整合蛋白黏著的影響 45 4-3-4 Rho的突變蛋白39KKART-46ARGRGDNP-65PGLYG探討第66位點對整合蛋白黏著的影響 46 4-3-5 39KKART-46ARGRGDNP-65PXLYG對不同整合蛋白的影響 47 第五章 討論 48 5-1 去整合蛋白Rhodostomin的C端區域各位點對於整合蛋白的影響 48 5-1-1 突變株P65A、R66A、Y67A、H68A對整合蛋白辨識的特異性 48 5-1-2 與先前Dennis等人的研究比較 48 5-2 不同的去整合蛋白C端保守序列對39KKART-46ARGRGDNP辨識整合蛋白的影響 49 5-2-1 不同C端保守序列對39KKART-46ARGRGDNP的影響 49 5-2-2 利用39KKART-46ARGRGDNP-65PGLYG進行C端區域的修改造成的影響 49 5-2-3 與實驗室先前研究結果比較 49 5-3 突變蛋白39KKART-46ARGRGDNP-65PGLYG的第66位點對於辨識整合蛋白的重要性 50 5-3-1 不同性質的胺基酸在第66個位點的影響性 50 5-3-2 探討正負電在第66個位點辨識αIIbβ3扮演的關鍵 51 第六章 結論 52 參考文獻 54

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