| 研究生: |
余品澔 Yu, Ping-Hao |
|---|---|
| 論文名稱: |
蛞形橙黃壺菌Aurantiochytrium limacinum BL10外泌蛋白之細胞與分子來源探討 Investigation of the Cellular and Molecular Origins of Secreted Proteins in Aurantiochytrium limacinum BL10 |
| 指導教授: |
陳逸民
Chen, Yi-Min |
| 學位類別: |
碩士 Master |
| 系所名稱: |
生物科學與科技學院 - 生物科技與產業科學系 Department of Biotechnology and Bioindustry Sciences |
| 論文出版年: | 2026 |
| 畢業學年度: | 114 |
| 語文別: | 中文 |
| 論文頁數: | 90 |
| 中文關鍵詞: | 橙黃壺菌(Aurantiochytrium limacinum) 、外泌蛋白 、阿米巴細胞 、#3413蛋白質 、RPT1-2 |
| 外文關鍵詞: | Aurantiochytrium limacinum, extracellular protein, amoeboid cells, #3413 protein, RPT1-2 |
| 相關次數: | 點閱:2 下載:0 |
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蛞形橙黃壺菌 Aurantiochytrium limacinum BL10 在固態培養條件下會分泌一種可影響阿米巴細胞分化與遷移、進而調控群落發展的外泌蛋白,其分子來源與生成機制尚未明確。本研究進一步證實,於液態培養條件下亦可偵測到與固態培養相同的主要外泌蛋白(75 kDa),且其出現時序落在對數生長中期、阿米巴細胞比例高峰之後。在透過調整培養打氣量以改變細胞型態分布,發現隨阿米巴細胞比例下降,外泌蛋白分泌量亦顯著降低,於高打氣條件下幾乎無法偵測,支持該外泌蛋白主要來自阿米巴細胞。進一步以候選基因 #3413 之 RPT1–2 區域建立多株抗體系統,於 western blot 中可同時辨識 75 kDa 之外泌蛋白及一條對應於 #3413 全長蛋白之條帶,推測該外泌蛋白為 #3413 蛋白質經分泌後由蛋白水解作用所產生之片段。
本研究首次從細胞型態與分子層級連結 BL10 主要外泌分化與遷移因子的細胞來源與生成機制,為理解其群落調控行為提供新的分子基礎。
Aurantiochytrium limacinum strain BL10 secretes an extracellular protein under solid culture conditions that regulates amoeboid cell differentiation and migration, thereby influencing colony development; however, the molecular origin and generation mechanism of this protein remain unclear. In this study, we demonstrate that the same major extracellular protein (~75 kDa) is also detectable under liquid culture conditions, appearing during the mid-logarithmic growth phase after the peak proportion of amoeboid cells. By modulating aeration rates to alter cell-type composition, we observed that a decrease in amoeboid cell abundance was accompanied by a marked reduction in extracellular protein secretion, with the protein becoming nearly undetectable under high-aeration conditions, supporting the notion that this extracellular protein is primarily derived from amoeboid cells. Furthermore, antibodies generated against the RPT1–2 region of the candidate gene #3413 simultaneously recognized the 75 kDa extracellular protein and a protein band corresponding to the full-length #3413 protein in Western blot analyses, suggesting that the extracellular protein is produced as a proteolytically processed fragment of the #3413 protein following secretion. Together, these findings provide an integrated link between cell morphology and molecular processing in BL10 and offer a new molecular basis for understanding colony-level regulation mediated by extracellular proteins.
1. 丁楹驊,橙黃壺菌BL10之多元不飽和脂肪酸合成酶的分析和純化,國立成功大學生物科技研究所碩士論文,2019。
2. 周思丞,探討橙黃壺菌BL10品系阿米巴細胞形成與遷移的機制,國立成功大學生物科技研究所碩士論文,2013。
3. 林芝妤,橙黃壺菌BL10新型分化及遷移因子的功能域分析,國立成功大學生物科技研究所碩士論文,2022。
4. 施佩于,橙黃壺菌BL10外泌蛋白#3413重組蛋白的表現及功能分析,國立成功大學生物科技研究所碩士論文,2020。
5. 陳宛渝,橙黃壺菌BL10品系之外泌蛋白純化與功能分析,國立成功大學生物科技研究所碩士論文,2015
6. 謝采妮,橙黃壺菌BL10遷移及分化因子的研究,國立成功大學生物科技研究所碩士論文,2018。
7. Ali, Y. B., R. Verger and A. Abousalham (2012). "Lipases or esterases: does it really matter? Toward a new bio-physico-chemical classification." Methods Mol Biol 861: 31-51.
8. Barriuso, J., A. Prieto and M. J. Martinez (2013). "Fungal genomes mining to discover novel sterol esterases and lipases as catalysts." BMC Genomics 14: 712.
9. Biancheri, P., A. Di Sabatino, G. R. Corazza and T. T. MacDonald (2013). "Proteases and the gut barrier." Cell Tissue Res 351(2): 269-280.
10. Bielska, E., P. R. J. Birch, A. H. Buck, C. Abreu-Goodger, R. W. Innes, H. Jin, M. W. Pfaffl, S. Robatzek, N. Regev-Rudzki, C. Tisserant, S. Wang and A. Weiberg (2019). "Highlights of the mini-symposium on extracellular vesicles in inter-organismal communication, held in Munich, Germany, August 2018." J Extracell Vesicles 8(1): 1590116.
11. Bongiorni, L. (2012). "Thraustochytrids, a neglected component of organic matter decomposition and food webs in marine sediments." Prog Mol Subcell Biol 53: 1-13.
12. Bongiorni, L., A. Pusceddu and R. Danovaro (2005). "Enzymatic activities of epiphytic and benthic thraustochytrids involved in organic matter degradation." Aquatic Microbial Ecology 41(3): 299-305.
13. Buhling, F., D. Groneberg and T. Welte (2006). "Proteases and their role in chronic inflammatory lung diseases." Curr Drug Targets 7(6): 751-759.
14. Charneco, G. O., M. L. Parages, T. Camarena-Gómez and C. Jiménez (2018). "Phosphorylation of MAP Kinases crucially controls the response to environmental stress in." Environmental and Experimental Botany 156: 203-213.
15. Chater, K. F., S. Biro, K. J. Lee, T. Palmer and H. Schrempf (2010). "The complex extracellular biology of Streptomyces." FEMS Microbiol Rev 34(2): 171-198.
16. Chaung, K. C., C. Y. Chu, Y. M. Su and Y. M. Chen (2012). "Effect of culture conditions on growth, lipid content, and fatty acid composition of Aurantiochytrium mangrovei strain BL10." AMB Express 2(1): 42.
17. Chou, S. C., Y. M. Su, T. Liu, Z. W. Li, H. E. Liao, P. P. Renta and Y. M. Chen (2022). "Novel potential functions of amoeboid cells in thraustochytrids revealed by Aurantiochytrium limacinum BL10." Eur J Protistol 82: 125860.
18. De Maio, A. (2014). "Extracellular Hsp70: export and function." Curr Protein Pept Sci 15(3): 225-231.
19. Dirir, A. M., K. Chokshi, A. H. Ali, M. Alhanawi, M. Rommala and M. Hachem (2025). "Gas chromatography for analysis and estimation of (13)C at natural abundance level in fatty acids produced from Aurantiochytrium limacinum, a sustainable source of polyunsaturated fatty acid." Front Bioeng Biotechnol 13: 1631063.
20. Garcia-Touchard, A., T. D. Henry, G. Sangiorgi, L. G. Spagnoli, A. Mauriello, C. Conover and R. S. Schwartz (2005). "Extracellular proteases in atherosclerosis and restenosis." Arteriosclerosis Thrombosis and Vascular Biology 25(6): 1119-1127.
21. Garcia-Vedrenne, A. E., M. Groner, A. Page-Karjian, G. F. Siegmund, S. Singhal, J. Sziklay and S. Roberts (2013). "Development of genomic resources for a thraustochytrid pathogen and investigation of temperature influences on gene expression." PLoS One 8(9): e74196.
22. Gebremedhn, S., A. Ali, A. Gad, R. Prochazka and D. Tesfaye (2020). "Extracellular Vesicles as Mediators of Environmental and Metabolic Stress Coping Mechanisms During Mammalian Follicular Development." Front Vet Sci 7: 602043.
23. Gile, G. H. (2024). "Protist symbionts of termites: diversity, distribution, and coevolution." Biol Rev Camb Philos Soc 99(2): 622-652.
24. Gomez-Arreaza, A., H. Acosta, W. Quinones, J. L. Concepcion, P. A. Michels and L. Avilan (2014). "Extracellular functions of glycolytic enzymes of parasites: unpredicted use of ancient proteins." Mol Biochem Parasitol 193(2): 75-81.
25. Jones, B. L., J. VanLoozen, M. H. Kim, S. J. Miles, C. M. Dunham, L. D. Williams and T. W. Snell (2013). "Stress granules form in Brachionus manjavacas (Rotifera) in response to a variety of stressors." Comp Biochem Physiol A Mol Integr Physiol 166(2): 375-384.
26. Juntila, D. J., K. Yoneda and I. Suzuki (2018). "Identification of extracellular proteins from sp 18W-13a." Journal of Applied Phycology 30(1): 63-69.
27. Kazmierczuk, A. and Z. M. Kilianska (2009). "[The pleiotropic activity of heat-shock proteins]." Postepy Hig Med Dosw (Online) 63: 502-521.
28. Langston, J. A., T. Shaghasi, E. Abbate, F. Xu, E. Vlasenko and M. D. Sweeney (2011). "Oxidoreductive cellulose depolymerization by the enzymes cellobiose dehydrogenase and glycoside hydrolase 61." Appl Environ Microbiol 77(19): 7007-7015.
29. Le Blastier, S., A. Hamels, M. Cabeen, L. Schille, F. Tilquin, M. Dieu, M. Raes and J. Y. Matroule (2010). "Phosphate starvation triggers production and secretion of an extracellular lipoprotein in Caulobacter crescentus." PLoS One 5(12): e14198.
30. Leonardi, S. S., E. Y. Koh, L. Deng, C. Huang, L. Tong, J. W. Wang and K. S. Tan (2022). "The synthesis of extracellular vesicles by the protistan parasite Blastocystis." Front Cell Infect Microbiol 12: 1019789.
31. Li, Z., X. J. Pang, H. Wu, J. Y. Zhang and Z. L. Wang (2025). "Identification of plasma extracellular vesicle protein biomarkers in diabetic retinopathy progression." Scientific Reports 15(1).
32. Liu, Y., P. Singh, Y. Liang, J. Li, N. Xie, Z. Song, M. Daroch, K. Leng, Z. I. Johnson and G. Wang (2017). "Abundance and molecular diversity of thraustochytrids in coastal waters of southern China." FEMS Microbiol Ecol 93(6).
33. Lopez-Mondejar, R., D. Zuhlke, D. Becher, K. Riedel and P. Baldrian (2016). "Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems." Sci Rep 6: 25279.
34. Manzke, O., H. Tesch, V. Diehl and H. Bohlen (1997). "Single-step purification of bispecific monoclonal antibodies for immunotherapeutic use by hydrophobic interaction chromatography." J Immunol Methods 208(1): 65-73.
35. Massiah, M. A., K. M. Wright and H. Du (2016). "Obtaining Soluble Folded Proteins from Inclusion Bodies Using Sarkosyl, Triton X-100, and CHAPS: Application to LB and M9 Minimal Media." Curr Protoc Protein Sci 84: 6 13 11-16 13 24.
36. Olena, Z., Y. Yang, Y. TingTing, Y. XiaoTao, R. HaiLian, X. Xun, X. Dong, W. CuiLing and H. HaiLun (2022). "Simultaneous preparation of antioxidant peptides and lipids from microalgae by pretreatment with bacterial proteases." Bioresour Technol 348: 126759.
37. Patel, S. (2017). "A critical review on serine protease: Key immune manipulator and pathology mediator." Allergol Immunopathol (Madr) 45(6): 579-591.
38. Steinfeld, L., A. Vafaei, J. Rosner and H. Merzendorfer (2019). "Chitin Prevalence and Function in Bacteria, Fungi and Protists." Adv Exp Med Biol 1142: 19-59.
39. Szymanski, C. M. and B. W. Wren (2005). "Protein glycosylation in bacterial mucosal pathogens." Nat Rev Microbiol 3(3): 225-237.
40. Taoka, Y., N. Nagano, Y. Okita, H. Izumida, S. Sugimoto and M. Hayashi (2009). "Extracellular enzymes produced by marine eukaryotes, thraustochytrids." Biosci Biotechnol Biochem 73(1): 180-182.
41. Wang, L., W. Yang, B. Li, S. Yuan and F. Wang (2021). "Response to stress in biological disorders: Implications of stress granule assembly and function." Cell Prolif 54(8): e13086.
42. Wu, Y. C., T. Liu, C. N. Liu, C. Y. Kuo, Y. H. Ting, C. A. Wu, X. L. Shen, H. C. Wang, C. J. Chen, P. P. Renta, Y. L. Chen, M. C. Hung and Y. M. Chen (2024). "Transcriptional, post-transcriptional, and post-translational regulation of polyunsaturated fatty acid synthase genes in Aurantiochytrium limacinum strain BL10: Responses to nitrogen starvation." Int J Biol Macromol 274(Pt 1): 133177.
43. Xiao, R., X. Li and Y. Zheng (2018). "Enzyme production by a fungoid marine protist, Thraustochytrium striatum." Eur J Protistol 66: 136-148.
44. Yakovlev, I., G. Vaaje-Kolstad, A. M. Hietala, E. Stefanczyk, H. Solheim and C. G. Fossdal (2012). "Substrate-specific transcription of the enigmatic GH61 family of the pathogenic white-rot fungus Heterobasidion irregulare during growth on lignocellulose." Appl Microbiol Biotechnol 95(4): 979-990.
45. Zhang, B., T. Wang, S. Ni, Y. Zong, N. Wang, Y. Si and Y. Li (2025). "A refolding tag for purifying bioactive recombinant proteins from E. coli inclusion bodies." Int J Biol Macromol 322(Pt 3): 146981.
46. Zimmann, N., P. Rada, V. Zarsky, T. Smutna, K. Zahonova, J. Dacks, K. Harant, I. Hrdy and J. Tachezy (2022). "Proteomic Analysis of Trichomonas vaginalis Phagolysosome, Lysosomal Targeting, and Unconventional Secretion of Cysteine Peptidases." Mol Cell Proteomics 21(1): 100174.