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研究生: 涂奇君
Tu, Chi-Chun
論文名稱: 探討 DAZL 與其單一核苷酸多型性對 NUDT21 蛋白表現之調控
To study the functional role of DAZL and SNP DAZL T54A in regulating NUDT21 protein expression
指導教授: 郭保齡
Kuo, Pao-Lin
共同指導教授: 曾大千
Tseng, Ta-Chien
學位類別: 碩士
Master
系所名稱: 醫學院 - 生物化學暨分子生物學研究所
Department of Biochemistry and Molecular Biology
論文出版年: 2011
畢業學年度: 99
語文別: 中文
論文頁數: 65
中文關鍵詞: 男性不孕症單一核苷酸多型性
外文關鍵詞: DAZL, NUDT21
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  • DAZ 家族包含三個成員 : BOULE、DAZL (DAZ-like) 和 DAZ,皆會專一性表現在生殖細胞中,具有結合 RNA 與蛋白質之功能。在男性不孕症病人常見其 Y 染色體長臂上的 AZF 區段之缺失,此區段包含 DAZ 基因。DAZ 的同源基因 DAZL 位於第三號染色體,在 DAZL 基因剃除的動物模式研究實驗中也發現生殖細胞缺失的現象,目前已知 DAZL 的缺失與不孕症有相關性,但受其調控之下游基因尚待探討。文獻指出 DAZL 會結合不同基因之 mRNA 來進行後轉錄作用的調控,藉由促進不同基因之蛋白表現,在精子形成過程中執行不同功能,所以 DAZL 在生殖細胞之發育與分化扮演重要角色。實驗室之前在患有無精子症與少精症的台灣男性不孕症病人中篩選到數個 DAZL 核苷酸突變與單一核苷酸多型性的變異,特別是在核苷酸 386 (T54A) 位置由 adenine 變成 guanine,此單一核苷酸多型性與不孕症病人有高度的關聯性。為了闡明單一核苷酸多型性對 DAZL 功能的影響,首先我們先利用 RNA 免疫沉澱分析並結合 deep-sequencing 技術篩選 DAZL 可能作用的 mRNA,我們得到 NUDT21、NUP50、KLHL12、KDELR1、VAPA、ABHD2、SUPT5H、MLL3、ATP6AP2 等可能是 DAZL 調控的 transcripts。其中 NUDT21 為 CFIm complex 的次單元,在文獻中指出會高量表現在老鼠生殖細胞且參與在精子形成過程中的 alternative polyadenylation 的機制,因此選定 NUDT21 作為探討 DAZL 調控機制的標的。結果顯示 DAZL 會結合 NUDT21 ,並透過後轉錄層面促進轉譯效率,增加 NUDT21 蛋白表現。然而帶有單一核苷酸多型性 DAZLT54A 會降低 NUDT21 的轉譯效率,造成 NUDT21 蛋白量減少,同時發現 SREBF2、NR6A1 及 TIMP-2 的 poly(A) 選擇位改變,結果顯示較短片段的 truncated 3’UTR 表現量增加,較長片段的 3’UTR 表現量相對減少,顯示 DAZL 可能參與 alternative polyadenylation。綜合以上結果顯示 NUDT21 為 DAZL 調控的下游基因,且帶有單一核苷酸多型性 DAZL 透過 NUDT21 改變基因 poly(A) 選擇位,此現象可能影響精子正常發育。

    The DAZ family encodes RNA-binding proteins that are essential for gametogenesis in metazoans. In humans, loss of the Y chromosomal DAZ genes is associated with oligozoospermia or azoospermia. A DAZ homolog, DAZL (DAZ-Like), is found in diverse organisms, including humans, and is required for germ cell development. Although the loss of DAZL is associated with infertility, the mechanism of how DAZL regulates its substrates is largely unknown. It has been proposed that DAZL controls spermatogenesis through regulating the translation efficiency of targeted mRNAs. Previously, we have identified a SNP of DAZL, the A to G transition at nucleotide 386 (T54A), which confers susceptibility to spermatogenic failure. A number of target transcripts, including NUDT21, NUP50, KLHL12, KDELR1, VAPA, ABHD2, SUPT5H, MLL3 and ATP6AP2, were also identified as targeted mRNA of DAZL. Among these genes, the NUDT21, encoding one of the CFIm subunits, was chose for further study. NUDT21 gene expresses three isoforms, including 1.1, 2.0 and 4.5 kb mRNA. While the 2.0 kb transcript is expressed in multiple tissues, the 1.1 kb transcript is dominantly expressed in male germ lines. NUDT21 participates in the alternative polyadenylation mechanism directed by noncanonical poly(A) signals during spermatogenesis. To study how NUDT21 is regulated by DAZL, RNA-IP and S6-IP were used to examine the binding activity and translational efficiency of NUDT21. We found DAZL increased both the binding activity and translational efficiency of the 1.1-kb transcript. However, the SNP DAZLT54A decreased translational efficiency of the 1.1-kb transcript and resulted in decreased NUDT21 protein level. Moreover, the alternative poly(A) site selection of SREBF2, NR6A1 and TIMP-2 was analyzed. We observed changes in the poly(A) site selection in DAZLT54A overexpressing cells. It suggests a role for DAZL in alternative poly(A) site selection. Together, these data support NUDT21 as a candidate target of DAZL, and also suggest SNP DAZLT54A may cause spermatogenic failure by altering the polyadenylation sites of genes via modulating the function of NUDT21.

    中文摘要 I 英文摘要 II 謝誌 IV 目錄 VI 表目錄 VIII 圖目錄 IX 附錄 X 第一章 緒論 1 第一節 男性不孕症 1 第二節 精子的形成過程 1 第三節 精子形成過程的基因表現 2 第四節 DAZ 基因家族與男性不孕症的關係 3 第五節 DAZL 在精子形成過程的角色 4 第六節 篩選 DAZL 調控的下游基因及結合序列 5 第七節 受 DAZL 調控的下游基因 6 第八節 DAZL參與在後轉錄調控作用的機制 7 第九節 於 mRNA 3’ 端進行剪切和加入 poly(A) 的過程 8 第十節 NUDT21 在精子形成過程扮演的角色 9 第十一節 研究動機 11 第二章 材料方法 12 實驗材料 12 實驗方法 17 第一節 細胞培養 17 (一) 人類子宮頸癌 (HeLa) 細胞之培養 17 (二) 短暫性轉移感染 17 第二節 分析核酸表現 17 (一) RNA抽取 17 (二) 利用 siRNA 來降低目標基因的表現 18 (三) 反轉錄反應 18 (四) 聚合酶連鎖反應 19 (五) 定量PCR 20 第三節 分析蛋白質的表現 20 (一) cell lysate 的製備 20 (二) 蛋白質濃度測定 21 (三) 西方點墨法 21 第四節 分析蛋白質與 RNA 相互作用 22 (一) Linearized template 22 (二) DNA / RNA 純化 22 (三) RNA Probe 的合成方式 23 (四) Biotin 標定之 probe 的 pull-down 分析方法 23 第五節 質體的建構 25 (一) DNA 膠體純化 25 (二) 限制酶處理 25 (三) DNA 接合 25 (四) 轉形作用 26 (五) 小量質體置備 26 (六) 大量質體置備 27 第六節 RNA 免疫沉澱分析 27 第七節 核酸醣體免疫沉澱分析 28 第三章 實驗結果 29 第一節 DAZL 會結合 NUDT21 的 mRNA 29 第二節 DAZL 在後轉錄層面調控 NUDT21 之角色 30 第三節 探討單一核苷酸多型性 DAZL 對 NUDT21 結合能力 30 第四節 單一核苷酸多型性 DAZL 會降低 short-form NUDT21 之表現 31 第五節 單一核苷酸多型性 DAZL 間接影響基因 polyadenylation 之位點選擇 32 第四章 討論 34 第一節 Alternative polyadenylation 的重要性 34 第二節 生殖細胞會表現專一性的 polyadenylation 蛋白來調控精子形成過程中 的基因表現 34 第三節 NUDT21 在精子形成過程中的角色 35 第四節 探討 DAZL 在精子形成過程中參與的後轉錄調控機制 36 第五節 探討 DAZLT54A 在精子形成過程的影響 38 第六節 總論 39 參考文獻 41 表 50 圖 52 附錄 63

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