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研究生: 白登成
Panigrahi, Bivas
論文名稱: 透過具流體動力學優勢之微環境實現斑馬魚精子操縱
Zebrafish Sperm Manipulation through Hydrodynamically Advantageous Microfluidic Environment
指導教授: 陳嘉元
Chen, Chia-Yuan
學位類別: 博士
Doctor
系所名稱: 工學院 - 機械工程學系
Department of Mechanical Engineering
論文出版年: 2020
畢業學年度: 108
語文別: 英文
論文頁數: 83
外文關鍵詞: Microfluidics, Artificial cilia, Hydrodynamic analysis, Zebrafish sperm activation, Zebrafish sperm retention
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  • Zebrafish is an invaluable animal model that has been extensively used to study toxicology, developmental biology, and human-related diseases. This animal model possesses a higher order of genetic similarity with humans, and its genomic structure can be custom edited to incorporate new genes making it an excellent animal model to study genetics and epigenetics of human diseases. This process results in a thousand of mutant & transgenic zebrafish lines, making it difficult to nurture them in laboratories due to limited availability of space and resources. To avail the zebrafish lines for futuristic research purposes, zebrafish sperms are collected and cryopreserved in various centers. To regenerate a specific zebrafish line, the cryopreserved sperms are collected, manually activated, and subsequently introduced with freshly collected eggs in a well-regulated environment. These manual processes are not only labor-intensive but also harmful towards sperm health, overall affecting the fertilization success. To address these issues, this thesis has devised microfluidic platforms that can facilitate cryopreserved zebrafish sperm manipulation towards On-Chip Fertilization (OCF) success. To initiate the motility, zebrafish sperms need to be diluted in an aqueous environment through the process of mixing towards altering their osmolality. As the zebrafish sperm exhibit burst motility (< 15 s), a microfluidic platform is in demand where specific tasks such as uniform mixing can be achieved within a minimal timeframe. In this aspect, by mimicking nature, an artificial cilia embedded microfluidic device was developed in Chapter 2, where micromixing efficiency of 84% was achieved within a timeframe of 5 s. Considering the delicate nature of zebrafish sperms, hydrodynamic forces imposed on them due to artificial cilia beating hypothesized to be crucial towards their activation. Hence, artificial cilia beating parameters were optimized in Chapter 3 towards cryopreserved sperm activation. With the optimized artificial cilia beating parameters, a serpentine microfluidic device was further designed, with which 74.44 ± 6.07% of the total number of sperms were activated. Considering that the cryopreservation protocols significantly alter the genetic integrity of sperm cells, a baffle based microfluidic device was designed in Chapter 4 towards progressively motile zebrafish sperm collection. All these proposed microfluidic devices were designed in such a way that they can be easily integrated as a single Lab-on-a-Chip device towards zebrafish OCF.

    Abstract I Acknowledgement III Table of Contents IV Table of Figures VIII Chapter 1: Physical Background 1 1.1 Zebrafish: an invaluable animal model 1 1.2 Zebrafish in-vitro fertilization 2 1.3 Research problems with current zebrafish in-vitro fertilization 3 1.4 Objectives and thesis organization 4 Chapter 2: Artificial Cilia Embedded Microfluidics 7 2.1 Concepts and related works 7 2.1.1 Natural cilia 7 2.1.2 Artificial cilia 9 2.2 Research questions and specific objectives 10 2.3 Materials and procedures 11 2.3.1 Design details 11 2.3.2 Fabrication 12 2.3.3 Magnetic actuation 13 2.3.4 Flow description 15 2.4 Results and discussions 16 2.4.1 Micromixing 16 2.4.2 Micropropulsion 20 2.5 Summary 23 Chapter 3: Microfluidic Zebrafish Sperm Activation 25 3.1 Concept and related works 25 3.2 Research questions and specific objectives 26 3.3 Materials and procedures 28 3.3.1 Design details 29 3.3.2 Experimental procedure and sperm motility analysis 31 3.3.3 µPIV analysis 32 3.3.4 Statistical analysis 33 3.4 Results & discussions 33 3.4.1 Hydrodynamic regulation towards zebrafish sperm activation 33 3.4.2 Superior sperm activation using artificial cilia embedded serpentine microfluidic platform 41 3.5 Summary 50 Chapter 4: Microfluidic Zebrafish Sperm Retention 51 4.1 Concept and related works 51 4.2 Research questions and specific objective 52 4.3 Materials and procedures 54 4.3.1 Design details 54 4.3.2 Fabrication 55 4.3.3 Experimental setup and procedures 56 4.3.4 Flow analysis 57 4.3.5 Statistics 59 4.4 Results and discussions 59 4.4.1 Experimental results of sperm retention 59 4.4.2 Fluid flow on zebrafish sperm swimming behaviors 64 4.4.3 Flow characterization towards sperm migration 67 4.4.4 Physical description of sperm migration 70 4.5 Summary 72 Chapter 5: Conclusion and Future Work 73 References 75 Appendix 82 Zebrafish core facility 82 Zebrafish sperm collection and storage 83

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