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研究生: 廖中健
Liao, Jhong-Jian
論文名稱: 點帶石斑魚sparc基因選殖及特性分析
Cloning and characterization of the grouper ( Epinephelus coioides ) sparc gene
指導教授: 陳宗嶽
Chen, Tzong-Yueh
學位類別: 碩士
Master
系所名稱: 生物科學與科技學院 - 生物科技研究所
Institute of Biotechnology
論文出版年: 2006
畢業學年度: 94
語文別: 中文
論文頁數: 70
中文關鍵詞: 石斑魚神經壞死病毒SPARC蛋白
外文關鍵詞: NNV(Nervous Necrosis Virus), grouper, SPARC
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  • 從點帶石斑魚感染神經壞死病毒(grouper nervous necrosis virus)與否之魚隻進行PCR-selected subtractive hybridization的比較試驗,其中發現點帶石斑魚sparc (secreted protein acidic and rich in cysteine/osteonectin )基因為具有差異性的標的基因之一,並輔以RACE (rapid amplification of cDNA ends)的方法將點帶石斑魚SPARC cDNA全長序列選殖完成,其開放性讀架(ORF)為912 bp,可轉譯出含303個氨基酸的蛋白,此蛋白含有(1) N端之acidic domain,具有一段訊息胜肽;(2) follistatin-like domain,具有一銅離子結合序列-(K)GHK;(3)C端之EC domain,具有兩個會與鈣離子結合之EF-hand motif,並由不同物種間的SPARC氨基酸序列比對可發現該蛋白中各功能區域具有高度保留的特性。從所獲得之點帶石斑魚sparc基因建構表現質體以大量表現點帶石斑魚SPARC蛋白,再以此重組蛋白免疫兔隻以取得抗石斑魚SPARC蛋白之抗體。以含不同濃度重組蛋白之細胞培養液進行細胞培養發現SPARC具有影響細胞型態的特性,同時也具有抑制細胞貼附以及抑制細胞生長的功能。此外,也以細胞轉染(transfection)方式將點帶石斑魚sparc基因送入GF-1細胞株,發現所表現之SPARC蛋白可被分泌至細胞外並可於細胞外被切割,推測點帶石斑魚SPARC蛋白如哺乳動物之SPARC蛋白具有被細胞外蛋白酶作用以增強生物功能之特性。此外以RT-PCR方法偵測,發現當神經壞死病毒感染點帶石斑魚後會導致魚體內sparc mRNA表現量有減少的現象發生,這也將值得繼續探討SPARC與魚病及魚生理的相關性。

    In the PCR-selected subtractive hybridization experiment of grouper, with NNV(grouper nervous necrosis virus) being infected or without, we discovered that sparc gene is one of the targeted genes expressed differently in these two population. By using the RACE method, we cloned grouper’s SPARC cDNA which consists of an open reading frame of 912 nucleotides encoding a 303 amino-acid protein. Alignment of grouper SPARC amino acid sequence with the various species, we found that it is highly conserved in every functional domain. The protein consists of an acidic domain in the N-terminus of the polypeptide as well as a signal sequence; a follistatin-like domain which is a cysteine-rich region contains a copper binding sequence-(K)GHK and a EC domain which contains two EF-hand motif located in the C-terminus of SPARC. Overexpression of recombinant grouper SPARC in E.coli BL21(DE3) and inoculating the rabbit with this protein are for the preparation of anti-grouper SPARC antibody. Also, after incubating GF-1 cells with E.coli expressing SPARC, we found that this protein has induced a change in cell morphology and elicited classic anti-adhesion and anti-proliferation characteristics. By expressing grouper’s sparc gene in GF-1 cells via transfection, we found that the recombinant protein was secreted and cleavaged in condition medium. We have found that the expression level of sparc mRNA in the grouper have decreased when infected with NNV which was detected by RT-PCR.

    中文摘要............................Ⅰ 英文摘要............................Ⅲ 誌謝..............................Ⅳ 目錄..............................Ⅴ 附圖目錄............................Ⅷ 前言 (一)點帶石斑魚.......................1 (二)SPARC蛋白之發現 ....................1 (三)SPARC之生理功能 ....................3 (四)SPARC於活體外細胞研究之發現 ..............4 (五)SPARC蛋白結構組成 ...................5 (六)石斑魚神經壞死病毒...................6 (七)研究目標........................7 材料及方法...........................8 實驗結果 (一)點帶石斑魚sparc基因選殖................24 (二)表現並純化點帶石斑魚SPARC重組蛋白...........25 (三)製備抗點帶石斑魚SPARC蛋白之多株抗體..........26 (四)證實點帶石斑魚SPARC重組蛋白具有抑制細胞附著及抑制細胞增生功能 .....................28 (五)點帶石斑魚sparc基因於石斑魚鰭細胞株(GF-1)之功能及表現位置 .......................31 (六)點帶石斑魚sparc基因於各組織之分佈表現情形.......32 (七)神經壞死病毒(NNV)感染魚隻後其體內sparc mRNA表現量之變化 ........................32 討論 (一)點帶石斑魚sparc基因序列、蛋白結構及演化分類......34 (二)原核系統重組蛋白之活性及抗體辨識性 ..........35 (三)探討SPARC之抑制細胞附著與抑制細胞增生功能.......36 (四)SPARC與病毒及免疫之相關性...............38 (五)SPARC於目前魚類研究近況及可能應用性..........40 參考文獻 ...........................41 附圖 .............................47 附表 .............................67 自述 .............................70 附圖目錄 圖一、點帶石斑魚sparc基因cDNA序列及所轉譯之氨基酸序列.....47 圖二、點帶石斑魚SPARC蛋白結構.................48 圖三、各物種間SPARC蛋白氨基酸序列比對分析...........49 圖四、各物種SPARC蛋白之親源演化樹狀圖.............51 圖五、利用大腸桿菌BL21(DE3)表現點帶石斑魚SPARC-His融合蛋白 ..52 圖六、利用Ni 2+親和力層析管柱純化點帶石斑魚SPARC-His融合蛋白(inclusion body) ..................53 圖七、利用Ni 2+親和力層析管柱純化點帶石斑魚SPARC-His融合蛋白(可溶性蛋白部分) ..................54 圖八、利用大腸桿菌BL21(DE3)表現點帶石斑魚GST-SPARC融合蛋白 ..55 圖九、以原核系統表現之重組蛋白測試自製抗石斑魚SPARC抗體....56 圖十、以真核系統表現之重組蛋白測試自製抗石斑魚SPARC抗體....57 圖十一、點帶石斑魚SPARC重組蛋白會影響GF-1細胞外表型態.....58 圖十二、點帶石斑魚SPARC重組蛋白可抑制GF-1細胞之附著力.....59 圖十三、點帶石斑魚SPARC重組蛋白抑制GF-1細胞貼附力以rounding index表示.......................60 圖十四、點帶石斑魚SPARC重組蛋白抑制GF-1細胞貼附力之控制組實驗 .........................61 圖十五、點帶石斑魚SPARC重組蛋白具有抑制GF-1細胞增生之特性...62 圖十六、於GF-1細胞表現點帶石斑魚SPARC-GFP融合蛋白並觀察其於細胞內所分佈位置 ..................63 圖十七、以西方墨點法檢驗經轉染之GF-1細胞內及培養液當中SPARC-GFP之表現....................64 圖十八、點帶石斑魚sparc基因於各組織之表現情況.........65 圖十九、經神經壞死病毒(NNV)感染之石斑魚體內sparc mRNA表現量之變化 .......................66 表一、primer sequence.....................67 附錄 附錄一、SPARC蛋白之三度空間結構與三功能區域之生理特性.....68 附錄二、SPARC與TGF-β相互調控與作用關係 ............69

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