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研究生: 顧聲豪
Ku, Sheng-Hao
論文名稱: 台灣棘阿米巴臨床及環境分離蟲株的細胞致病性與基因型別分析
Cytopathogenicity and genotyping of Acanthamoeba clinical and environmental isolates in Taiwan
指導教授: 林威辰
Lin, Wei-Chen
辛致煒
Shin, Jyh-Wei
學位類別: 碩士
Master
系所名稱: 醫學院 - 微生物及免疫學研究所
Department of Microbiology & Immunology
論文出版年: 2017
畢業學年度: 105
語文別: 中文
論文頁數: 54
中文關鍵詞: 棘阿米巴棘阿米巴角膜炎毒力鑑定胺肽酶
外文關鍵詞: Acanthamoeba, Acanthamoeba keratitis, Virulence identification, Aminopeptidase
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  • 棘阿米巴是一種在水體內自由營生的寄生蟲,主要會出現在河川、水庫、湖泊、溫泉等水域,原蟲在感染後會對人類造成棘阿米巴角膜炎或者是肉芽腫性阿米巴腦炎。目前為止,除了接種到動物身上測試,還沒有其他方法可以去判斷這些環境中的蟲株是否會對人類造成疾病。為了找出可能的方法去鑑定棘阿米巴蟲株的毒性,我們從台灣各地水庫、河川等地收集了 16 株環境蟲株。為避免其他
    環境因子影響,我們嘗試將這些蟲株從充滿細菌、黴菌的環境水體中分離出來,至今共有 16 株已成功分離至無菌培養。為鑑定這些蟲株的毒性,我們建立細胞病變效應測試嘗試量化蟲株對細胞的破壞程度,進而測試並統計所收集的各蟲株對細胞的毒力。 在本研究將蟲株的毒力程度與樣本採集的時間與地點等流行病學資訊交叉比對後 ,發現在秋季所採集到的環境蟲株相較其他蟲株對細胞的破壞力較強。然而,若是在每次採集水體後,期望進一步鑑定原蟲之致病力,都要從分離、純化培養棘阿米巴蟲株到 CPE 鑑定,太過於耗時。因此,本研究希望進一步嘗試尋找與致病力相關的生物標記進行基因分型,以求能更快速的鑑定棘阿米巴的致病性強弱。我們以毒力強弱不等的各蟲株之 M20/M25/M40 胺肽酶序列為目標進行定序分析,再根據基因序列變異區域進行型別分析。結果顯示:蟲株
    M20/M25/M40 胺肽酶序列變異區域與蟲株對細胞的破壞毒力強弱並無絕對相關性。 本研究成功建立棘阿米巴分離蟲株對細胞致病性的鑑定技術,並完成所收集純化的台灣本土臨床及環境分離株的毒力進行量化。雖然目前的各基因分型方式仍皆無法與蟲株致病性連結,本研究成果仍可望作為未來持續前進的重要基礎。

    For an accurate investigation of the virulence variability among the Acanthamoeba environmental isolates in Taiwan, we established a cytopathic effect assay (CPE) and a
    new set of differential genotypes, which were according to a potential virulence factor, Aminopeptidase M20/M25/M40 (ACA1_264610). In this study, we successfully
    identified and quantified the cytopathogenicity of the clinical and environmental Acanthamoeba isolates. The present study provides novel epidemiological information but the isolates do not exhibit significant virulent shifts in Aminopeptidase
    M20/M25/M40 genotyping.

    目錄 中文摘要…………………………………………………………………I 英文摘要………………………………………………………………II 誌謝………………………………………………………………………V 目錄……………………………………………………………………VII 表目錄……………………………………………………………………X 圖目錄…………………………………………………………………XI 參考圖表目錄…………………………………………………………XII 第一章 緒論……………………………………………………………1 1.1 棘阿米巴生活史…………………………………………………2 1.2 棘阿米巴轉型……………………………………………………3 1.3 棘阿米巴的致病因子………………………………………………3 1.4 棘阿米巴相關疾病…………………………………………………4 1.5 棘阿米巴相關疾病的診斷…………………………………………5 1.6 棘阿米巴相關疾病的治療…………………………………………5 1.7 棘阿米巴的分佈……………………………………………………7 1.8 棘阿米巴的分類與致病力…………………………………………7 1.9 胺肽酶………………………………………………………………8 1.10 總結………………………………………………………………9 第二章 實驗設計……………………………………………………10 第三章 材料與方法…………………………………………………11 3.1 棘阿米巴生長培養基 Peptone-yeast extract-glucose (PYG) 配製……………………………………………………………………11 3.2 棘阿米巴培養用緩衝液 Page’s modified Neff’s amoeba saline (PAS) 配製…………………………………………………11 3.3 棘阿米巴培養……………………………………………………11 3.3.1 棘阿米巴繼代培養……………………………………………12 3.3.2 棘阿米巴解凍及保存…………………………………………12 3.4 RNA 萃取…………………………………………………………13 3.5 Genomic DNA 萃取………………………………………………13 3.6 聚合酶連鎖反應 (PCR) ………………………………………13 3.6.1 PCR 反應步驟…………………………………………………13 3.6.2 PCR 核酸產物電泳……………………………………………14 3.7 反轉錄聚合酶連鎖反應 (RT -PCR) …………………………14 3.7.1 cDNA 合成………………………………………………………14 3.7.2 RT -PCR 反應步驟……………………………………………15 3.7.3 RT -PCR 核酸產物電泳………………………………………15 3.8 大鼠腦神經膠細胞(C6)的培養…………………………………15 3.8.1 C6 細胞培養液 DMEM…………………………………………15 3.8.2 磷酸鹽緩衝生理鹽水 PBS(Phosphate buffered saline)…………………………………………………………………………15 3.8.3 C6 細胞繼代培養………………………………………………16 3.9 細胞病變效應測試(cytopathic effect; CPE)………………16 3.10 吉姆薩染液………………………………………………………16 3.11 細胞病變效應測試染色後面積計算…………………………17 3.12 環境中棘阿米巴分離…………………………………………17 3.12.1 無養分培養皿 NN (Non¬Nutrient (Amoeba Saline) Agar)……………………………………………………………………17 3.12.2 環境蟲株的培養……………………………………………17 3.12.3 利用 NN Agar 將環境蟲株的分離(死菌) ………………17 3.12.4 利用 NN Agar 將環境蟲株的分離(活菌) ………………18 3.12.5 3%HCl 環境蟲株的分離 …………………………………18 第四章 結果…………………………………………………………19 4.1 環境棘阿米巴……………………………………………………19 4.1.1 環境分之棘阿米巴分離概況……………………………………19 4.1.2 環境分離之棘阿米巴培養狀況………………………………19 4.2 蟲株與細胞的細胞病變效應……………………………………20 4.2.1 ATCC_30010、ATCC_50492、NCKH_D 與 C6 細胞的共培養………………………………………………………………………20 4.2.2 環境與臨床蟲株的細胞病變效應……………………………20 4.3 序列分析…………………………………………………………20 4.3.1 環境蟲株基因型與毒力………………………………………21 4.3.2 標準、臨床蟲株基因型與毒力………………………………21 4.3.3 ATCC_30010 與 NCKH_D 之胺肽酶 M20/M25/M40 表達……21 4.3.4 臨床蟲株與環境蟲株之胺肽酶 M20/M25/M40 表達…………22 4.3.5 蟲株間胺肽酶 M20/M25/M40 序列分析結果與毒力的關係………………………………………………………………………22 4.3.6 胺肽酶 M20/M25/M40 的訊號胜肽……………………………22 4.3.7 環境與臨床蟲株之胺肽酶 M20/M25/M40 的訊號胜肽與毒力分析……………………………………………………………………22 第五章 討論…………………………………………………………23 參考文獻………………………………………………………………27 附錄 1 儀器與材料…………………………………………………51 附錄 2 參考圖表……………………………………………………54 表目錄 表 1. 引子序列表…………………………………………………34 表 2. 棘阿米巴環境蟲株列表……………………………………35 表 3. 棘阿米巴環境蟲株培養狀況與 CPE 破壞程度…………36 表 4. 臨床與標準株棘阿米巴 CPE 破壞程度……………………37 表 5. 棘阿米巴環境蟲株與其基因型 …………………………38 圖目錄 圖 1. 棘阿米巴與大鼠腦神經膠細胞共培養結果………………39 圖 2. 標準與臨床棘阿米巴的細胞病變效應結果………………40 圖 3. 環境棘阿米巴的細胞病變效應結果………………………41 圖 4. 棘阿米巴 ATCC_30010 與 NCKH_D 之胺肽酶 M20/M25/M40……………………………………………………………42 圖 5. 胺肽酶 M20/M25/M40 ACA1_264610 之功能預測…………43 圖 6. 確認蟲株內的胺肽酶 M20/M25/M40 之表達………………44 圖 7. 胺肽酶 M20/M25/M40 保守區序列分析……………………45 圖 8. 胺肽酶 M20/M25/M40 前段序列分析………………………46 圖 9. 胺肽酶 M20/M25/M40 保守區序列分析-2…………………47 圖 10. 胺肽酶 M20/M25/M40 前段序列分析……………………48 圖 11. 胺肽酶 M20/M25/M40 訊號胜肽差異……………………49 圖 12. 不同蟲株間胺肽酶 M20/M25/M40 訊號胜肽分析………50 參考圖表目錄 附錄 圖 1. 環境棘阿米巴原蟲與 ATCC 正控 18S rRNA gene 以引子裁剪後的序列樹狀圖……………………………………………54

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