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研究生: 鄭姝玉
Cheng, Shu-Yu
論文名稱: 人類KIAA0020蛋白在轉譯作用的角色
The role of human KIAA0020 in translation
指導教授: 張玲
Cheng, Christina Ling
學位類別: 碩士
Master
系所名稱: 醫學院 - 分子醫學研究所
Institute of Molecular Medicine
論文出版年: 2011
畢業學年度: 99
語文別: 中文
論文頁數: 90
中文關鍵詞: pumilio蛋白RNA結合蛋白KIAA0020轉譯作用DDX3x
外文關鍵詞: pumilio protein, RNA-binding protein, KIAA0020, DDX3x, translation.
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  • 人類KIAA0020蛋白為pumilio蛋白家族的一員,而pumilio家族隸屬於RNA結合蛋白。目前對於pumilio家族蛋白的研究指出,此種蛋白的功能為結合上RNA的三端非轉譯區域片段,藉此調控mRNA在轉譯的穩定性。KIAA0020在不同癌症組織的表現量有不同的表現,並且現階段對於KIAA0020蛋白在轉譯的功能上還沒有被了解。本研究利用免疫細胞化學染色發現KIAA0020蛋白在人類HeLa及HEK293T細胞中,發現KIAA0020座落於細胞核內並有聚集現象,並且也利用去除KIAA0020 N端或C端的變異蛋白在 HEK293T細胞中表現的位置,推論N端或C端對於此蛋白聚集於核內及入核的現象為重要的區域。另外,本研究也利用半定量聚合酶鏈式反應,測量候選基因mRNA的表現量,及西方點漬法測量後選基因DDX3x蛋白,在這些研究結果發現KIAA0020與調控DDX3x有相當的關係,也在RNA免疫沉澱分析中也發現DDX3x mRNA能與KIAA0020蛋白有結合的現象。本研究也利用標定35S至新合成蛋白的分析下發現,人類神經母細胞瘤NB69細胞在穩定表現KIAA0020蛋白的情況下有較多新合成的蛋白。這些結果暗示了KIAA0020蛋白在細胞中的角色可能有參與轉錄到轉譯的過程,但還須更多方面的探討來確定KIAA0020蛋白在細胞中的功能。

    Human KIAA0020 belongs to the Puf-family, a protein family of RNA-binding proteins. The functions of the Puf-family members in some species are known to bind to the 3’UTR and hence modulate the stability of mRNA during translation. Although the role of human KIAA0020 in translation is currently unclear, it is frequently deregulated in a variety of cancers. We found in immunocytochemistry experiment that KIAA0020 is localized to and aggregate in the nuclei of human HeLa and HEK293T cells. And by overexpressing N and/or C terminal deleted KIAA0020 in HEK293T cell, both N- and C-terminal appeared to be essential for its nuclear localization and staining patterns. Furthermore, the results of semi-quantitative RT-PCR and western blot showed that the expression level of the candidate mRNA DDX3x may be regulated by KIAA0020. In RNA immunoprecipitation assay we also demonstrated that DDX3x mRNA interact with KIAA0020 proteins. In this study, 35S labeling assay is also used to demonstrate that KIAA0020 overexpression in human neuroblastoma NB69 cells increase global translation level of the cell. These studies provide preliminary understanding about the functions of KIAA0020 in cellular function; however, further investigation is required to clarify the role of KIAA0020 protein in cells.

    第一章 序論 1-1 Pumilio蛋白家族 10 1-2 真核生物的pumilio蛋白 10 1-3 人類pumilo蛋白 11 1-4 KIAA0020蛋白 11 1-5 mRNA三端非轉譯區域 12 1-6 DDX3x基因 13 1-7 實驗目的 14 1-8 實驗目標 14 第二章 材料與方法 2-1 細胞培養 15 2-1-1 培養細胞之方法 15 2-1-2 冷凍細胞 15 2-1-3 細胞解凍 15 2-1-4 藉由Lipofectamine 2000系統進行細胞轉染 16 2-1-5 藉由Calcium phosphate進行細胞轉染 16 2-1-6 包裝基因進入Lentiviral 16 2-1-7 藉由病毒轉染方法製作穩定表現基因之細胞 17 2-2 建構pKIAA0020 variants-HA質體 17 2-3 萃取核醣核酸 17 2-4 反轉錄聚合酶連鎖反應(Polymerase chain reaction ,PCR) 18 2-5 反轉錄聚合酶連鎖反應放大KIAA0020變異基因片段 18 2-6 半定量反轉錄聚合酶連鎖反應(Semi quantitative Reverse transcription-PCR) 18 2-7 35S標定 19 2-8 蛋白質二維電泳Two-dimensional electrophoresis 19 2-9 核醣核酸免疫沉澱法(RNA immunoprecipitation) 21 第三章 實驗結果 3-1 建構 pKIAA0020 variants -HA-RFP 質體 22 3-2 測定KIAA0020在人類細胞內的位置 22 3-2-1 內生性KIAA0020蛋白在人類細胞表現位置 22 3-2-2 外生性KIAA0020蛋白在人類細胞表現位置 23 3-3 藉由 35S 標定方法偵測KIAA0020調升新生成蛋白效率 24 3-4在HeLa 降低內生性KIAA0020細胞株內DDX3x及c-myc mRNA有下降的現象 24 3-5 過量表現KIAA0020 的NB69細胞株DDX3x 蛋白量也隨之提升 25 3-6 DDX3x RNA 會與KIAA0020蛋白結合 25 第四章 討論 第五章 參考文獻 第六章 結果圖表 表一、 不同物種間pumilio家族蛋白胺基酸相似度 31 表二、 放大KIAA0020不同大小片段的引子 32 表三、 特定基因所使用的片段放大引子 33 圖一、 KIAA0020所預測之功能區域 34 圖二、 建構含有KIAA0020變異基因序列之質體 36 圖三、 內生性KIAA0020蛋白於人類細胞的位置 37 圖四、 外生性KIAA0020刪除變異蛋白於人類HEK293T細胞的位置 38 圖五、 在人類神經母細胞瘤NB69細胞株發現KIAA0020影響轉譯作用 39 圖六、 使用二維膠體證明KIAA0020在人類神經母細胞瘤NB69細胞株影響轉譯作用 42 圖七、 人類與斑馬魚KIAA0020蛋白有高度相似性 43 圖八、 在HeLa細胞發現KIAA0020蛋白影響DDX3x基因表現 44 圖九、 DDX3x蛋白在HeLa 下降KIAA0020蛋白之細胞株有下降的趨勢 45 圖十、 DDX3x蛋白在NB69過量表現KIAA0020蛋白之細胞株有上升的趨勢 46 圖十一、 DDX3x mRNA與KIAA0020蛋白在細胞內直接結合 47 第七章 附錄 附錄一、人類PUM1蛋白與hunchback NRE RNA結合之結晶結構圖 48 附錄二、 Pumilio區域與RNA base結合序列統計簡圖 49 附錄三、與pumilio 家族結合之RNA 預測序列 50 附錄四、Pumilio蛋白功能簡圖 51 附錄五、人類KIAA0020蛋白結構預測圖 52 附錄六、KIAA0020轉譯序列全長 53 附錄七、KG-1細胞之KIAA0020的轉譯序列 54 附錄八、質體定序資料 55 pIRES-RFP-4xHA_KIAA0020 WT 55 pIRES-RFP-4xHA_KIAA0020 M1 59 pIRES-RFP-4xHA_KIAA0020 M2 63 pIRES-RFP-4xHA_KIAA0020 M3 66 pIRES-RFP-4xHA_KIAA0020 M4 70 pIRES-RFP-4xHA_KIAA0020 M5 73 pIRES-RFP-4xHA_KIAA0020 M6 76 pCMV-LucR-polyA-SV40-LucF 79 pCMV-LucR-Tex10 3’UTR-polyA-SV40-LucF 83 pCMV-LucR-C-myc 3’UTR-polyA-SV40-LucF 87

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