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研究生: 郭昭佑
Kuo, Jhao-You
論文名稱: 免疫功能低下病人之單純疱疹病毒抗藥性篩檢與胸苷激酶上突變Y248D之探討
Drug Resistant Screening and Investigation of Y248D Mutation on Thymidine Kinase among Immunocompromised Patients with HSV-1 infections
指導教授: 蔡慧頻
Tsai, Huey-Pin
學位類別: 碩士
Master
系所名稱: 醫學院 - 醫學檢驗生物技術學系
Department of Medical Laboratory Science and Biotechnology
論文出版年: 2021
畢業學年度: 109
語文別: 英文
論文頁數: 68
中文關鍵詞: 單純疱疹病毒第一型 (HSV-1)Acyclovir(ACV)病毒胸苷激酶(vTK)ACV抗藥性 (ACV-resistant)反相高效液相色譜 (Reverse-phase high performance liquid chromatography)
外文關鍵詞: Herpes simplex virus-1 (HSV-1), Acyclovir (ACV), Viral thymidine kinase (vTK), ACV-resistant, Reverse-phase high performance liquid chromatography (RP-HPLC)
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  • 單純疱疹病毒第一型(Herpes simplex virus type 1, HSV-1)之感染容易在免疫功能低下病患中引起嚴重腦炎。治療單純疱疹病毒的最常見藥物為 Acyclovir(ACV),ACV 經由抑制病毒胸苷激酶(viral Thymidine Kinase, vTK)和病毒 DNA聚合酶(viral DNA polymerase, vDP)的活性以終止病毒的複製。然而,長時間接受 ACV 治療患者較易產生抗藥性之病毒株,導致罹病率和死亡率顯著增加。由於目前未有文獻報導南台灣地區 ACV 抗藥性 HSV-1 感染之盛行率與其突變基因的抗藥相關機制之探討。因此我們的研究旨在篩檢免疫功能低下患者中 ACV 抗藥性之 HSV-1 病毒,並聚焦於抗藥病毒株過去文獻尚未發表突變位點之抗藥性機制。
    我們以 Plaque reduction assay 和 DNA reduction assay 篩檢成大醫院 294 位病人(其中免疫功能低下者為 222 例)的 420 病毒株之 ACV 抗藥性,具抗藥性之病毒株則再進一步以 Sanger 定序方法鑑定 vTK 和 vDP 基因全長之突變位點。結果顯示具 ACV 抗藥性 HSV-1 的病患比率為 1.7% (5/294)與抗藥病毒 7 株,亦發現過去文獻尚未發表的基因突變位點有 4 個:其中一株的突變發生於 vTK 的 Y248D和在其他病毒株發現 vDP 中 683-688、R227H 和 A351D 之 3 個突變位點。
    為了研究 vTK 的 Y248D 突變位點之抗藥性機制,我們利用 site-directed mutagenesis 技術製備具備單點突變的 vTK ( MtY248D-vTK)。後續把 WtKOS-vTK(wild-type vTK, ACV-sensitive type)和 MtY248D-vTK 送入 Vero 細胞組中過量表現。再以標準病毒株 KOS (sensitive strain)感染有加入 ACV 藥物之過量表現WtKOS-vTK 和 MtY248D-vTK 的 Vero 細胞中,實驗結果發現 WtKOS-vTK 組別病毒量顯著下降,而在 MtY248D-vTK 組別中發現 ACV 無法使 KOS virus 之病毒量減少。此外,以反相高效液相色譜(Reverse-phase high performance liquid
    chromatography)方法證實在 MtY248D-vTK 組別無法偵測到 vTK 的磷酸化產物(ACV-triphosphate);以上結果顯示 MtY248D-vTK 具備使 ACV 失效之抗藥性能力。
    總結,Y248D 突變可透過干擾 vTK 的磷酸化功能使 HSV-1 具 ACV 抗藥性。

    Herpes simplex virus-1 (HSV-1) infections cause severe herpes encephalitis in immunocompromised patients. Acyclovir (ACV) as antiviral drug is often used for therapy of HSV-1 infections in patients. ACV could inhibit the activity of viral thymidine kinase (vTK) and viral DNA polymerase (vDP) for termination of HSV-1 replication. Prolonged treatment with ACV may result in the emergence of ACVresistant HSV-1, which is associated with significant morbidity and mortality. However, the occurrence rate of ACV-resistant HSV-1 infections in immunocompromised patients in Southern Taiwan is unclear and the mutation database remains limited. Therefore, our study aimed to understand the positive rate of ACV-resistant HSV-1 infections in immunocompromised patients and further study the ACV-resistant mechanism of the novel genetic mutations.
    A total of 294 cases including 222 immunocompromised cases with 420 clinical isolates were screened for ACV-resistance by plaque reduction assay (PRA) and supplementary DNA reduction assay (DRA). ACV-resistant HSV-1 isolates were further sequenced by Sanger sequencing to identify the mutations in the full-length sequence of vTK and vDP. The study showed the positive rate of ACV-resistant HSV-1 patients was accounted for 1.7% (5/294) and 7 ACV-resistant HSV-1 isolates were found. Four unpublished mutations were from various ACV-resistant isolates including substitution Y248D in vTK and deletion in 683-688, R227H, and A351D of vDP.
    To investigate the ACV-resistant mechanism of novel substitution Y248D, the mutant (MtY248D-vTK mimicked ACV-resistant strain) clone was prepared by sitedirected mutagenesis. WtKOS-vTK (wild-type vTK, ACV-sensitive type) and MtY248D-vTK was overexpressed in Vero cell line CCL-81 individually. Percent of plaque formation of reference HSV-1 strain KOS (standard sensitive type) decreased significantly in WtKOS-vTK group with ACV treatment. However, percentage of plaque formation of laboratory HSV-1 strain KOS showed no significantly difference between Vector group and MtY248D-vTK group with ACV. Moreover, compared to WtKOS-vTK group with ACV treatment, ACV-triphosphate as product for antiviral effect was not detected in MtY248D-vTK group by reverse phase-high performance liquid chromatography (RP-HPLC). It means ACV had no effect in KOS virus with overexpressing MtY248D-vTK. Overall, our data showed novel mutation Y248D could be contributed to HSV-1 ACV resistance by altering phosphorylation function of vTK.

    中文摘要 I Abstract III 致謝 V Contents VI Ⅰ. Abbreviation 1 Ⅱ. Introduction 2 1. Introduction of Herpes simplex virus type 1 (HSV-1) 2 1.1 Classification, structure, and life cycle of HSV-1 2 1.2 Clinical manifestations of HSV-1 infection 5 1.3 Long-term latency and recurrence in trigeminal ganglia 5 2. Antiviral agents for HSV-1 infection 5 3. ACV-resistant HSV-1 6 3.1 Positive rate of ACV-resistant HSV-1 in immunocompetent and immunocompromised patients 6 3.2 Mechanism of resistance to ACV 7 3.3 Laboratory assays for detection of ACV-resistant HSV-1 8 4. Research motive 9 4.1 Significance 9 4.2 Specific Aims 9 Ⅲ. Materials and methods 10 1. Clinical specimens and laboratory HSV-1 strains 10 2. Cell culture and virus isolates 10 3. Antiviral compound 11 4. Phenotypic analysis 11 5. Genotypic analysis 12 6. Overexpression of plasmid pAL119-TK in Vero cell CCL-81 13 7. Western blotting 17 8. Reverse phase high performance liquid chromatography (RP-HPLC) 17 9. Protocol of growth curve test 19 Ⅳ. Results 21 1. Clinical manifestations of HSV-1 infected patients in NCKUH 21 2. Phenotypic analysis of ACV-resistant (ACV-R) HSV-1 clinical isolates 21 3. Genotypic analysis of ACV-resistant HSV-1 clinical isolates 22 4. ACV-resistant HSV-1 single clone from clinical isolate by plaque purification 24 5. Expression of vTK in ACV-resistant HSV-1 isolate with the novel mutation Y248D was significantly lower than in ACV-sensitive HSV-1 isolate 25 6. In vitro model was constructed for overexpressing viral thymidine kinase 25 7. Validation the ACV resistance effect of novel mutation Y248D 26 8. Mutation Y248D does not interfere with the viral replication rate 29 Ⅴ. Discussion. 30 Ⅵ. References 35 Ⅶ. Tables and Figures 39 Table 1. Immunocompromised patients with HSV-1 infection from January 2014 to July 2019 (n=222) 39 Table 2. Phenotypic and genotypic analysis of drug resistant of HSV-1 laboratory reference strains 40 Table 3. Phenotypic and genotypic analysis of ACV resistant among clinical isolates from HSV-1 infected patients 41 Table 4. Phenotypic analysis of antiviral activity of FOS and CDV among clinical isolates from ACV-resistant HSV-1 patients 42 Figure 1. Plaque reduction assay of clinical HSV-1 isolates with CDV 43 Figure 2. Plaque reduction assay of clinical HSV-1 isolates with FOS 44 Figure 3. Phenotypic and genotypic analysis of unpurified clinical isolates C118-1, C118-3, and C118-4 with ACV from patient B 45 Figure 4. Plaque reduction assay of purified and unpurified HSV-1 isolates from patient B with ACV 46 Figure 5. Genotypic analysis of purified clinical isolates C118-1, C118-3, and C118-4 with ACV 47 Figure 6. HSV-1 vTK expression of laboratory strains and clinical HSV-1 isolates by western blot 48 Figure 7. Construction of plasmids overexpressing in vitro wildtype and mutant viral thymidine kinase 49 Figure 8. Overexpressing various in vitro viral thymidine kinase in Vero cell 50 Figure 9. Overexpressing various in vitro viral thymidine kinase in 143B cell 51 Figure 10. Plaque formation percentage of ACV-R-HSV-1 (purified isolates) in Vero cell overexpressing in vitro vTK 52 Figure 11. Plaque formation percentage of ACV-S-HSV-1 (KOS and purified isolate) in Vero cells overexpressing in vitro vTK 53 Figure 12. RP-HPLC/UV analysis of standard ACVTP (ACV-triphosphate) 54 Figure 13. RP-HPLC/UV analysis and calibration curve of standard ACVTP after extracted by perchloric acid 55 Figure 14. RP-HPLC/UV analysis of ACVTP (RT: 5.3) in different groups overexpressing in vitro vTK 56 Figure 15. RP-HPLC/UV analysis of ACVTP (RT: 5.1) in different groups overexpressing in vitro vTK in 143B cell (Vector / WtKOS-vTK / MtY248D-vTK group) 57 Figure 16. Calibration curve of the extracted ACVMP (RT: 2.4) 58 Figure 17. RP-HPLC/UV analysis of ACVMP (RT: 2.4) in 143B cell group overexpressing in vitro vTK (WtKOS-vTK group) 59 Figure 18. RP-HPLC/UV analysis of ACVMP (RT: 2.4) in different 143B cell groups overexpressing in vitro vTK (Mock / Vector / WtKOS-vTK group) 60 Figure 19. RP-HPLC/UV analysis of ACVMP (RT: 2.4) in different groups overexpressing in vitro vTK (Mock / Vector / WtKOS-vTK / MtY248D-vTK group) 61 Figure 20. Cytopathic effect of laboratory strains and clinical HSV-1 isolates observed at 6 / 12 / 24 / 36 / 48 / 72 hours by inverted microscope 62 Figure 21. Growth curve of laboratory strains and clinical HSV-1 isolates 63 Ⅷ. Applendix 64 Table S1. Primers, probes, and PCR conditions for DNA reduction assay 64 Table S2. Primers for UL23 and UL30 gene sequence amplification and analysis 65 Figure S1. HSV-1 genome structure 66 Figure S2. Gene analysis and protein prediction of viral thymidine kinase 67 Figure S3. Full sequence map for plasmid pAL119-TK (https://www.addgene.org/21911/) 68

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