| 研究生: |
林建皓 Lin, Jian-Hao |
|---|---|
| 論文名稱: |
泛素化對登革病毒前驅膜蛋白的影響 The effects of ubiquitination on the dengue virus prM protein |
| 指導教授: |
余佳益
Yu, Chia-Yi |
| 學位類別: |
碩士 Master |
| 系所名稱: |
醫學院 - 微生物及免疫學研究所 Department of Microbiology & Immunology |
| 論文出版年: | 2021 |
| 畢業學年度: | 109 |
| 語文別: | 中文 |
| 論文頁數: | 52 |
| 中文關鍵詞: | 泛素化 、登革病毒 、prM |
| 外文關鍵詞: | ubiquitination, dengue virus, prM |
| 相關次數: | 點閱:162 下載:0 |
| 分享至: |
| 查詢本校圖書館目錄 查詢臺灣博碩士論文知識加值系統 勘誤回報 |
泛素化是一種在真核細胞中,透過泛素蛋白的轉譯後修飾以調控細胞內的生理機能。有報導指出登革病毒可利用宿主的泛素化修飾來幫助自身的複製。過去研究中發現在不影響病毒組裝的情況下,抑制泛素—蛋白酶體系統可以減少病毒的釋出。因此推測主導病毒成熟到釋出階段的病毒蛋白─前驅膜蛋白 (prM)和套膜蛋白 (E)可能具有泛素化,並且會受到蛋白酶體抑制劑的影響。在本研究中,我們發現prM在蛋白酶體抑制劑作用下表現量會大幅提升。藉由不具有離胺酸 (lysine, K)的prM (6KR)與野生型 (WT)相比,發現prM蛋白穩定度、細胞內的分布以及furin 剪切的程度皆因泛素化而有所改變。透過一系列只含有單一個lysine的泛素蛋白,確認prM的泛素化是透過K6及K33兩種鍵結。經由序列分析比對四種血清型的登革病毒後,我們建構分別只含有一個高保留lysine的prM,並發現這些lysine皆能被泛素化蛋白修飾。雖然這些泛素化不影響prM在細胞內的穩定度及分布,但我們發現prM(K52)上的泛素化是以K6的方式鍵結,並且可以提升furin剪切的效率。總結來說,我們發現泛素化改變登革prM的蛋白性質,有助於了解病毒蛋白與宿主的交互作用,並有望成為登革感染治療的新方向。
The dengue virus (DENV) utilizes ubiquitination to regulate its viral replication. Proteasomal inhibitors have been shown to reduce the release but not the assembly of the virus. Since DENV prM protein might be responsible for the proteasome inhibitor-directed effects through ubiquitination, we pulled down the prM by immunoprecipitation (IP) and checked its ubiquitination. To characterize properties of prM without ubiquitination, we designed the prM-6KR mutant that all the lysine residuals were replaced by arginine. Although both prM and E protein participated in the maturation and release processes of DENV, prM but not E protein expression level was significantly enhanced by the proteasome inhibitor. Moreover, the stability, subcellular localization, and furin cleavage efficiency were all differed between WT and 6KR. To uncover the linkage type of the prM ubiquitination, we generated a series of Ub mutants with only one lysine residue. Thus, the K6- and K33-linked ubiquitination was identified on the DENV prM protein. By the same concept using a series of prM with only one lysine residue, we found all conserved lysine among the four serotypes of DENVs could be ubiquitinated. These single-lysine prM proteins hardly affected prM stability and subcellular localization, but the furin cleavage seemed enhanced by the K6-linked ubiquitination on the prM K52 residue. In conclusion, ubiquitination might alter DENV prM stability, subcellular localization, and vulnerability to furin; whether particular linkage of Ub on specific prM residues alter virus infectivity remains to be discovered in the future.
1. Simmonds P, Becher P, Bukh J, Gould EA, Meyers G, Monath T, Muerhoff S, Pletnev A, Rico-Hesse R, Smith DB, Stapleton JT, Ictv Report C. 2017. ICTV Virus Taxonomy Profile: Flaviviridae. J Gen Virol 98:2-3.
2. Schmaljohn AL, McClain D. 1996. Alphaviruses (Togaviridae) and Flaviviruses (Flaviviridae). In th, Baron S (ed), Medical Microbiology, Galveston (TX).
3. Shu PY, Chen LK, Chang SF, Su CL, Chien LJ, Chin C, Lin TH, Huang JH. 2004. Dengue virus serotyping based on envelope and membrane and nonstructural protein NS1 serotype-specific capture immunoglobulin M enzyme-linked immunosorbent assays. J Clin Microbiol 42:2489-94.
4. Filomatori CV, Lodeiro MF, Alvarez DE, Samsa MM, Pietrasanta L, Gamarnik AV. 2006. A 5' RNA element promotes dengue virus RNA synthesis on a circular genome. Genes Dev 20:2238-49.
5. Gritsun TS, Gould EA. 2007. Origin and evolution of 3'UTR of flaviviruses: long direct repeats as a basis for the formation of secondary structures and their significance for virus transmission. Adv Virus Res 69:203-48.
6. Markoff L. 1989. In vitro processing of dengue virus structural proteins: cleavage of the pre-membrane protein. J Virol 63:3345-52.
7. Cahour A, Falgout B, Lai CJ. 1992. Cleavage of the dengue virus polyprotein at the NS3/NS4A and NS4B/NS5 junctions is mediated by viral protease NS2B-NS3, whereas NS4A/NS4B may be processed by a cellular protease. J Virol 66:1535-42.
8. Rice CM, Lenches EM, Eddy SR, Shin SJ, Sheets RL, Strauss JH. 1985. Nucleotide sequence of yellow fever virus: implications for flavivirus gene expression and evolution. Science 229:726-33.
9. Gould EA, Solomon T. 2008. Pathogenic flaviviruses. Lancet 371:500-9.
10. Wang SF, Chang K, Loh EW, Wang WH, Tseng SP, Lu PL, Chen YH, Chen YA. 2016. Consecutive large dengue outbreaks in Taiwan in 2014-2015. Emerg Microbes Infect 5:e123.
11. Fried JR, Gibbons RV, Kalayanarooj S, Thomas SJ, Srikiatkhachorn A, Yoon IK, Jarman RG, Green S, Rothman AL, Cummings DA. 2010. Serotype-specific differences in the risk of dengue hemorrhagic fever: an analysis of data collected in Bangkok, Thailand from 1994 to 2006. PLoS Negl Trop Dis 4:e617.
12. Conway MJ, Watson AM, Colpitts TM, Dragovic SM, Li Z, Wang P, Feitosa F, Shepherd DT, Ryman KD, Klimstra WB, Anderson JF, Fikrig E. 2014. Mosquito saliva serine protease enhances dissemination of dengue virus into the mammalian host. J Virol 88:164-75.
13. Hidari KI, Suzuki T. 2011. Dengue virus receptor. Trop Med Health 39:37-43.
14. Rodenhuis-Zybert IA, Wilschut J, Smit JM. 2010. Dengue virus life cycle: viral and host factors modulating infectivity. Cell Mol Life Sci 67:2773-86.
15. Byk LA, Gamarnik AV. 2016. Properties and Functions of the Dengue Virus Capsid Protein. Annu Rev Virol 3:263-281.
16. Li L, Lok SM, Yu IM, Zhang Y, Kuhn RJ, Chen J, Rossmann MG. 2008. The flavivirus precursor membrane-envelope protein complex: structure and maturation. Science 319:1830-4.
17. Cleaves GR, Ryan TE, Schlesinger RW. 1981. Identification and characterization of type 2 dengue virus replicative intermediate and replicative form RNAs. Virology 111:73-83.
18. Stocks CE, Lobigs M. 1998. Signal peptidase cleavage at the flavivirus C-prM junction: dependence on the viral NS2B-3 protease for efficient processing requires determinants in C, the signal peptide, and prM. J Virol 72:2141-9.
19. Perera R, Kuhn RJ. 2008. Structural proteomics of dengue virus. Curr Opin Microbiol 11:369-77.
20. Nemesio H, Villalain J. 2014. Membranotropic regions of the dengue virus prM protein. Biochemistry 53:5280-9.
21. Wang S, He R, Anderson R. 1999. PrM- and cell-binding domains of the dengue virus E protein. J Virol 73:2547-51.
22. Catteau A, Roue G, Yuste VJ, Susin SA, Despres P. 2003. Expression of dengue ApoptoM sequence results in disruption of mitochondrial potential and caspase activation. Biochimie 85:789-93.
23. Che P, Tang H, Li Q. 2013. The interaction between claudin-1 and dengue viral prM/M protein for its entry. Virology 446:303-13.
24. Dias RS, Teixeira MD, Xisto MF, Prates JWO, Silva JDD, Mello IO, Silva CCD, De Paula SO. 2021. DENV-3 precursor membrane (prM) glycoprotein enhances E protein immunogenicity and confers protection against DENV-2 infections in a murine model. Hum Vaccin Immunother 17:1271-1277.
25. Mann M, Jensen ON. 2003. Proteomic analysis of post-translational modifications. Nat Biotechnol 21:255-61.
26. Klein T, Eckhard U, Dufour A, Solis N, Overall CM. 2018. Proteolytic Cleavage-Mechanisms, Function, and "Omic" Approaches for a Near-Ubiquitous Posttranslational Modification. Chem Rev 118:1137-1168.
27. Lin H, Caroll KS. 2018. Introduction: Posttranslational Protein Modification. Chem Rev 118:887-888.
28. Ramazi S, Zahiri J. 2021. Posttranslational modifications in proteins: resources, tools and prediction methods. Database (Oxford) 2021.
29. Gelderblom HR. 1996. Structure and Classification of Viruses. In th, Baron S (ed), Medical Microbiology, Galveston (TX).
30. Kumar R, Mehta D, Mishra N, Nayak D, Sunil S. 2020. Role of Host-Mediated Post-Translational Modifications (PTMs) in RNA Virus Pathogenesis. Int J Mol Sci 22.
31. Lu W, Strohecker A, Ou Jh JH. 2001. Post-translational modification of the hepatitis C virus core protein by tissue transglutaminase. J Biol Chem 276:47993-9.
32. Courageot MP, Frenkiel MP, Dos Santos CD, Deubel V, Despres P. 2000. Alpha-glucosidase inhibitors reduce dengue virus production by affecting the initial steps of virion morphogenesis in the endoplasmic reticulum. J Virol 74:564-72.
33. Zai J, Mei L, Wang C, Cao S, Fu ZF, Chen H, Song Y. 2013. N-glycosylation of the premembrane protein of Japanese encephalitis virus is critical for folding of the envelope protein and assembly of virus-like particles. Acta Virol 57:27-33.
34. Carbaugh DL, Lazear HM. 2020. Flavivirus Envelope Protein Glycosylation: Impacts on Viral Infection and Pathogenesis. J Virol 94.
35. Rathore AP, Paradkar PN, Watanabe S, Tan KH, Sung C, Connolly JE, Low J, Ooi EE, Vasudevan SG. 2011. Celgosivir treatment misfolds dengue virus NS1 protein, induces cellular pro-survival genes and protects against lethal challenge mouse model. Antiviral Res 92:453-60.
36. Su CI, Tseng CH, Yu CY, Lai MMC. 2016. SUMO Modification Stabilizes Dengue Virus Nonstructural Protein 5 To Support Virus Replication. J Virol 90:4308-4319.
37. Hadden JW. 1975. Thymopoietin, ubiquitin and the differentiation of lymphocytes. Clin Bull 5:66-7.
38. Kliza K, Husnjak K. 2020. Resolving the Complexity of Ubiquitin Networks. Front Mol Biosci 7:21.
39. Fricker LD. 2020. Proteasome Inhibitor Drugs. Annu Rev Pharmacol Toxicol 60:457-476.
40. Shaid S, Brandts CH, Serve H, Dikic I. 2013. Ubiquitination and selective autophagy. Cell Death Differ 20:21-30.
41. Gomez-Diaz C, Ikeda F. 2019. Roles of ubiquitin in autophagy and cell death. Semin Cell Dev Biol 93:125-135.
42. Giraldo MI, Xia H, Aguilera-Aguirre L, Hage A, van Tol S, Shan C, Xie X, Sturdevant GL, Robertson SJ, McNally KL, Meade-White K, Azar SR, Rossi SL, Maury W, Woodson M, Ramage H, Johnson JR, Krogan NJ, Morais MC, Best SM, Shi PY, Rajsbaum R. 2020. Envelope protein ubiquitination drives entry and pathogenesis of Zika virus. Nature 585:414-419.
43. Giraldo MI, Vargas-Cuartas O, Gallego-Gomez JC, Shi PY, Padilla-Sanabria L, Castano-Osorio JC, Rajsbaum R. 2018. K48-linked polyubiquitination of dengue virus NS1 protein inhibits its interaction with the viral partner NS4B. Virus Res 246:1-11.
44. Scaturro P, Cortese M, Chatel-Chaix L, Fischl W, Bartenschlager R. 2015. Dengue Virus Non-structural Protein 1 Modulates Infectious Particle Production via Interaction with the Structural Proteins. PLoS Pathog 11:e1005277.
45. Kumar S, Barouch-Bentov R, Xiao F, Schor S, Pu S, Biquand E, Lu A, Lindenbach BD, Jacob Y, Demeret C, Einav S. 2019. MARCH8 Ubiquitinates the Hepatitis C Virus Nonstructural 2 Protein and Mediates Viral Envelopment. Cell Rep 26:1800-1814 e5.
46. Chiramel AI, Meyerson NR, McNally KL, Broeckel RM, Montoya VR, Mendez-Solis O, Robertson SJ, Sturdevant GL, Lubick KJ, Nair V, Youseff BH, Ireland RM, Bosio CM, Kim K, Luban J, Hirsch VM, Taylor RT, Bouamr F, Sawyer SL, Best SM. 2019. TRIM5alpha Restricts Flavivirus Replication by Targeting the Viral Protease for Proteasomal Degradation. Cell Rep 27:3269-3283 e6.
47. Schubert U, Ott DE, Chertova EN, Welker R, Tessmer U, Princiotta MF, Bennink JR, Krausslich HG, Yewdell JW. 2000. Proteasome inhibition interferes with gag polyprotein processing, release, and maturation of HIV-1 and HIV-2. Proc Natl Acad Sci U S A 97:13057-62.
48. Choy MM, Zhang SL, Costa VV, Tan HC, Horrevorts S, Ooi EE. 2015. Proteasome Inhibition Suppresses Dengue Virus Egress in Antibody Dependent Infection. PLoS Negl Trop Dis 9:e0004058.
49. Wang DW, Peng ZJ, Ren GF, Wang GX. 2015. The different roles of selective autophagic protein degradation in mammalian cells. Oncotarget 6:37098-116.
50. Wong SS, Haqshenas G, Gowans EJ, Mackenzie J. 2012. The dengue virus M protein localises to the endoplasmic reticulum and forms oligomers. FEBS Lett 586:1032-7.
51. Meusser B, Hirsch C, Jarosch E, Sommer T. 2005. ERAD: the long road to destruction. Nat Cell Biol 7:766-72.
52. Xie X, Zou J, Zhang X, Zhou Y, Routh AL, Kang C, Popov VL, Chen X, Wang QY, Dong H, Shi PY. 2019. Dengue NS2A Protein Orchestrates Virus Assembly. Cell Host Microbe 26:606-622 e8.
53. Yu CY, Hsu YW, Liao CL, Lin YL. 2006. Flavivirus infection activates the XBP1 pathway of the unfolded protein response to cope with endoplasmic reticulum stress. J Virol 80:11868-80.
54. Yoshida H, Matsui T, Yamamoto A, Okada T, Mori K. 2001. XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factor. Cell 107:881-91.
55. Grice GL, Nathan JA. 2016. The recognition of ubiquitinated proteins by the proteasome. Cell Mol Life Sci 73:3497-506.
56. Xu P, Duong DM, Seyfried NT, Cheng D, Xie Y, Robert J, Rush J, Hochstrasser M, Finley D, Peng J. 2009. Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell 137:133-45.
57. Katzmann DJ, Babst M, Emr SD. 2001. Ubiquitin-dependent sorting into the multivesicular body pathway requires the function of a conserved endosomal protein sorting complex, ESCRT-I. Cell 106:145-55.
58. Migliano SM, Teis D. 2018. ESCRT and Membrane Protein Ubiquitination. Prog Mol Subcell Biol 57:107-135.
59. Dobzinski N, Chuartzman SG, Kama R, Schuldiner M, Gerst JE. 2015. Starvation-Dependent Regulation of Golgi Quality Control Links the TOR Signaling and Vacuolar Protein Sorting Pathways. Cell Rep 12:1876-86.
60. Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Saric A, Lindas AC, Robinson NP, Baum B. 2020. The proteasome controls ESCRT-III-mediated cell division in an archaeon. Science 369.
61. Tabata K, Arimoto M, Arakawa M, Nara A, Saito K, Omori H, Arai A, Ishikawa T, Konishi E, Suzuki R, Matsuura Y, Morita E. 2016. Unique Requirement for ESCRT Factors in Flavivirus Particle Formation on the Endoplasmic Reticulum. Cell Rep 16:2339-47.