| 研究生: |
賴文忠 Lai, Wen-Chung |
|---|---|
| 論文名稱: |
利用核磁共振化學位移之二維分析預測蛋白質二級結構與胱胺酸氧化還原狀態之網路伺服器 A Web-based Server for Predicting the Secondary Structures of Proteins and Redox States of Cysteine by Using 2D NMR Chemical Shifts |
| 指導教授: |
王清正
Wang, Ching-Cheng |
| 學位類別: |
碩士 Master |
| 系所名稱: |
電機資訊學院 - 製造工程研究所 Institute of Manufacturing Engineering |
| 論文出版年: | 2006 |
| 畢業學年度: | 94 |
| 語文別: | 中文 |
| 論文頁數: | 59 |
| 中文關鍵詞: | NMR 、二級結構 、預測 、化學位移 、氧化還原狀態 |
| 外文關鍵詞: | chemical shifts, NMR, prediction, redox states, secondary structure |
| 相關次數: | 點閱:73 下載:1 |
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2DCSi利用核磁共振化學位移(NMR chemical shifts),包含1Hα、1HN、13Cα、13C’、15NH等原子相對於13Cβ原子的二維叢集分析(2D cluster analyses),來預測20種胺基酸的二級結構,與胱胺酸(Cysteine,Cys)的氧化還原態(redox states)。
我們從BioMagResBank (BMRB)資料庫提供的檔案中擷取每一個胺基酸的1Hα、1HN、13Cα、13C’、15NH、13Cβ原子的化學位移,建立計分矩陣(scoring matrix),以此計分矩陣為基礎,使用者可利用我們架設之2DCSi伺服器,輸入胺基酸化學位移資料、或上傳BMRB檔案,來預測其二級結構與胱胺酸之氧化還原狀態。
2DCSi server網址:http://ncku.2dsci.idv.tw。
2DCSi predicts the secondary structures of 20 amino acids and the redox states of cysteine residues in proteins by using their NMR chemical shifts.
We use 2D cluster analyses of 1Hα, 1HN, 13Cα, 13C’, and 15NH versus 13Cβ NMR chemical shifts which were constructed from BioMagResBank (BMRB) entries. A database of 20 amino acids’ 1Hα, 1HN, 13Cα, 13C’, 15NH, and 13Cβ NMR chemical shifts were obtained and then used to produce the scoring matrices. Applying the prediction rules, the 2DCSi server enables users to submit NMR chemical shifts data and to request protein secondary structure assignments and the redox states of cysteine residues.
2DCSi server is available at http://ncku.2dsci.idv.tw.
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