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研究生: 張瀚文
Zhang, Han-Wen
論文名稱: PARP1在複製壓力下的功能
The function of PARP1 under replication stress
指導教授: 廖泓鈞
Liaw, Hung-Jiun
學位類別: 碩士
Master
系所名稱: 生物科學與科技學院 - 生命科學系
Department of Life Sciences
論文出版年: 2021
畢業學年度: 109
語文別: 中文
論文頁數: 59
中文關鍵詞: DNA修復DNA複製加成性致死PARP1
外文關鍵詞: DNA damage and repair, DNA replication, Synthetic lethal, PARP1
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  • PARP1對於PRR機制 (Post-replication repair)中反向複製叉的形成有著重要的作用,反向複製叉可以在DNA損傷發生後停止並保護DNA複製叉,防止DNA損傷進一步擴大,但是目前PARP1是如何參與PRR機制並調控反向複製叉的生成還有待研究。在本篇研究中我們通過CRISPR技術產生了PARP1 knockout細胞株,我們發現與野生型細胞相比PARP1 knockout細胞株在面對HU (Hydroxyurea)所造成的複製壓力時,DNA的複製速率會有增加的趨勢,而在面對MMS (Methyl methane sulfonate)產生的複製壓力時,PARP1 knockout細胞株的複製速率又會低於野生型細胞。我們的研究成果顯示PARP1缺乏細胞複製速率的增減,取決於複製壓力的類型。另外PARP1的抑制或缺乏會導致homologous recombination defective cells (例如BRCA1/2突變細胞)產生加成性致死 (Synthetic lethal)。利用此機制目前臨床上開發出PARP1抑制劑Olaparib,用於治療BRCA1/2突變的癌症,但是抗藥性問題使得Olaparib的泛用性大大的降低,我們與成功大學化學系的邱顯泰教授合作,嘗試尋找可以治療BRCA2突變癌細胞的藥物,利用結腸癌細胞HCT116 及HCT116 BRCA2-/-測試從邱老師實驗室所合成的30種化合物。最後通過兩輪篩選我們發現2種化合物對於BRCA2-/-細胞似乎具有加成性致死的的效果,但都不比Olaparib有效。HCT116細胞株是良好的藥物篩選平台,可以篩選更多化合物期待能找到與Olaparib一樣甚至具有更好效果的藥物。

    PARP1 plays an important role in the formation of reverse forks in response to replication stress. The formation of reversed forks protects stalling forks from collapse into DNA double-strand breaks and are vital to maintain genome stability. However, it remains unclear how PARP1 participates in the formation of reversed forks. Here, we generated the PARP1-knockout human cell lines by using CRISPR-mediated gene knockout strategy. We found that the depletion of PARP1 results in longer replication tracks in response to hydroxyurea (HU)-induced replication stress compared with wild type cells. By contrast, the depletion of PARP1 further reduces the length of replication tracks in response to methyl methane sulfonate (MMS)-induced replication stress. Our results indicate that the progression of replication tracks during replication stress depends on types of DNA lesions. Additionally, the inhibition of PARP1 shows synthetic lethal phenotypes in the homologous recombination (HR)-defective cells, such as BRCA1 or BRCA2 mutant cells. Therefore, the PARP1 inhibitors, such as Olaparib, has been developed to treat the BRCA1 or BRCA2 mutant cancers successfully. However, drug resistance occurs and has become an obstacle for the efficacy of the treatment. In order to develop new chemicals to treat HR-defective mutant cancers, we perform drug screening from chemical deposits kindly provided by Dr. Hsien-Tai Chiu, Dept of Chemistry, National Cheng Kung University. We used the BRCA2-deficient colorectal cell line HCT116 (BRCA2-/-) to screen for chemicals. In the end, we found two chemicals that show more sensitive in BRCA2-/- cells than the wild type cells. However, comparing with Olaparib, the two chemicals are not as effective as Olaparib. The BRCA2-/- cells are good platform to screen for chemicals. Further screening can be conducted to find chemicals that are as effective as Olaparib.

    摘要 I Extended abstract II 致謝 XVI 目錄 XVII 圖目錄 XIX 壹、引言 1 1.1 DNA損傷及損傷反應 1 1.2 細胞內的DNA 修復系統 1 1.3 錯配修復 (Mismatch repair, MMR) 2 1.4 鹼基切除修復 (Base excision repair, BER) 3 1.5 核甘酸切除修復 (Nucleotide excision repair, NER) 3 1.6 非同源末端連接 (Non homologous end-joining, NHEJ) 4 1.7 同源重組 (Homologous recombination, HR) 5 1.8 複製後修復(Postreplication Repair, PRR) 6 1.9 PARP1 (Poly (ADP-ribose) polymerase 1) 7 1.10 利用DNA fibre 技術來研究後複製修復 9 1.11 加成性致死 (Synthetic Lethality)與癌症 10 貳、研究動機與目的 11 Part. I PARP1缺乏細胞對於不同複製壓力的DNA複製速率差異 11 Part. II尋找能誘發BRCA2缺陷細胞加成性致死的藥物 11 參、材料與方法 13 3.1 細胞培養 13 3.2 細胞存活率分析 13 3.3 慢病毒製作 14 3.4 反轉錄病毒製作 14 3.5 PARP1 knockout細胞生產 15 3.6 蛋白質萃取 16 3.7 西方墨點 16 3.8 sgRNA位點的同義突變質體製備 18 3.9 細胞轉染 (Transfection) 21 3.10 DNA纖維 (DNA fibre) 21 肆、結果 24 Part. I PARP1缺乏細胞對於不同DNA損傷的複製速率差異 4.1.1 產生T24 PARP1 knockout細胞株及測試在不同複製壓力下的DNA複製速率 24 4.1.2 嘗試挽救T24 PARP1 knockout 及Hone 6 PARP1 Knockout 25 Part. II尋找能誘發BRCA2缺陷細胞加成性致死的藥物 4.2.1 尋找誘發BRCA2加成性致死的化合物 27 4.2.2 與現行藥物進行比較 28 伍、 討論 29 Part. I PARP1缺乏細胞對於不同複製壓力的DNA複製速率差異 29 Part. II 尋找能誘發BRCA2缺陷細胞加成性致死的藥物 30 陸、參考文獻 32 柒、附錄 40

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