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研究生: 李燕如
Lee, Yan-Ju
論文名稱: RNA干擾現象對於抑制牛流行熱病毒複製及醣蛋白G基因表現之研究
The inhibition of bovine ephemeral fever viral replication and glycoprotein G gene expression by RNA interference
指導教授: 陳世輝
Chen, Shih-Hui
學位類別: 碩士
Master
系所名稱: 生物科學與科技學院 - 生命科學系
Department of Life Sciences
論文出版年: 2005
畢業學年度: 93
語文別: 中文
論文頁數: 107
中文關鍵詞: 牛流行熱病毒RNA干擾現象小片段干擾性RNA小片段環狀結構干擾性RNA基因沉默pcDNA3.1/BEFV-G載體pENTER/U6載體共轉染作用
外文關鍵詞: Bovine ephemeral fever virus (BEFV), small interference RNA (siRNA), RNA interference (RNAi), short hairpin RNA (shRNAs), gene silencing, pcDNA3.1/BEFV-G vector, pENTER/U6 vector, cotransfection.
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  •   牛流行熱病毒( Bovine ephemeral fever virus,BEFV )於分類上屬於子彈型病毒科(Rhabdoviridae),流行熱病毒屬(ephemerovirus),牛流行熱病毒可經由庫蠓等節肢動物為媒介,經傳染之乳牛、黃牛及水牛有發燒、泌乳量驟降甚至停止的情形。BEFV具外套膜之負性單股RNA病毒,在外套膜中有一個貫膜性結構G醣蛋白(envelope glycoprotein G),分子量為81KDa,具中和性抗原決定部位,可以刺激牛隻產生保護性免疫反應,但目前疫苗效力仍不佳。RNA干擾現象(RNA interference, RNAi)是指利用特定序列轉錄之小片段干擾性RNA(small interfering RNA, siRNA),會形成帶有一段小片段環狀結構干擾性RNA (short harpin RNA),經Dicer作用切成21-24 nt的小片段siRNAs,siRNAs會再和RISC (RNA-induced silencing complex)結合,降解同源的mRNAs,進而使mRNA無法轉譯,造成該特定基因沉默(gene silencing )。本研究探討病毒醣蛋白G基因的shRNA之病毒干擾效果,提供治療之參考。首先取西元2001年牛流行熱病毒分離株醣蛋白G基因的已知核酸序列,以該序列之前、中及後段設計三段shRNA序列,並將三段shRNA序列構築於pENTER/U6載體中(即pU6-shRNA345,pU6-shRNA701及pU6-shRNA1820),利用RNA polymeraseIII U6 promoter驅動其表現。另外,將G的全長序列構築於pcDNA.3.1/V5-His-TOPO載體中(即pcDNA3.1/BEFV-G),作為受siRNA作用之目標基因。並且將pcDNA3.1/BEFV-G載體轉染BHK-21細胞株(Baby Hamster Kidney cell - 21) ,分別於24 、48及72小時後,利用RT-PCR分析G 基因表現量,結果顯示G 基因表現量於轉染48小時後達到最大量。將pU6-shRNA345、pU6-shRNA701及pU6-shRNA1820轉染48小時後,分別以100及10 TCID50劑量病毒攻毒之,續培養48及72小時後,利用RT-PCR及免疫雜配法發現三組pU6-shRNAs不論病毒攻毒劑量多少皆可以明顯抑制G基因和G醣蛋白之表現,對於病毒本身之複製干擾比較無大的差異,100 TCID50劑量病毒攻毒24及48小時後,三組pU6-shRNAs感染細胞培養液,發現病毒效價(TCID50)分別為:pU6-shRNA345組,10-3.33及10-4.1;pU6-shRNA701組,10-4及10-4.2;pU6-shRNA1820組,10-3.8及10-4.64,對照組則為10-5及10-5.8,有些微干擾效果(大約10倍以上干擾), 細胞病變亦有緩和的趨勢。若改用共轉染pcDNA3.1/BEFV-G和三組pU6-shRNAs載體之測試結果顯示,於轉染後48小時,G基因表現量並無被抑制。由以上結果顯示,本研究針對BEFV G基因所設計之pU6-shRNAs的確可抑制G基因表現及干擾病毒複製,但必須在病毒感染前先轉染這些pU6-shRNAs,希望未來能進一步提昇其效力。

     Bovine ephemeral fever virus (BEFV) is caused by an arthropod-borne rhabdovirus, classified as the genus Ephemerovirus, and can cause an acute febrile diease in cattle and water buffalo. The BEFV virion contains a single-stranded, negative-sense RNA genome and a lipid envelope. The 81 KDa BEFV envelope G glycoprotein contains type-specific and neutralizing antigenic sites and can induce protective immunity in cattle. RNA interference (RNAi) is a process of sequence-specific post-transcriptional gene silencing induced mediated by double stranded RNA and is a powerful genetic approach to analyze gene function in animals and plants. Three short hairpin RNAs (shRNAs) are constructed into pENTER/U6 vector containing RNA polymerase Ⅲ U6 promoter and siRNA sequence. These three shRNAs vectors are designated as pU6-shRNA345, pU6-shRNA701 and pU6-shRNA1820. The full length G gene was constructed into the pcDNA.3.1/V5-His-TOPO vector and designated as pcDNA3.1/BEFV-G. Then transfection of pcDNA3.1/BEFV-G into BHK-21 cell, after 24, 48, and 72 hrs, total cellular RNA was extracted and analyzed by RT-PCR. G gene was found to maximally expressed after 48 hrs culture. BHK-21 cells were pre-transfected with these three shRNA constructrs and incubated for 48, and 72 hrs, BEFV virus was then inoculated (10 TCID50 and 100 TCID50 dose). All pU6-shRNAs could silence the expression of G gene and G glycoprotein of BEFV by RT-PCR and Western blot in all viral inoculated cells. The BHK-21 cells transfected with three shRNAs and challenged with 100 TCID50 dose for 24 hrs and 48 hrs, obtained viral TCID50 titers as followes : pU6-shRNA345, was 10-3.33 and 10-4.1; pU6-shRNA701,was 10-4 and 10-4.2; pU6-shRNA1820,was 10-3.8 and 10-4.64 , respectively. TCID50 titers of the control cells were calculated to be 10-5 and 10-5.8. We suggested that three pU6-shRNAs did not silence the virus replication very effectively in our case. When pU6-shRNAs and glycoprotein G were cotransfected, G gene expression was not inhibited. Our results showed that by transfecting the pU6-shRNAs could silence the G gene expression and interfere with the virus replication by transfecting these pU6-shRNAs before viral infection. The fact revealed that a more high antivirus capability should be increased in our feature study.

    中文摘要 I Abstract III 誌謝 V 目錄 VI 表目錄 VIII 圖 目 錄 IX 附表及附圖目錄 X 縮 寫 目 錄 XI 壹、緒論 1 1.1. RNAi干擾現象(RNA interference, RNAi)的起源及作用機制 1 1.2. 設計siRNA序列及構築載體表現系統 2 1.3. RNAi於哺乳動物系統之表現及應用 3 1.4. 應用RNAi抑制病毒複製能力研究 5 1.5. 牛流行熱病毒的歷史背景及臨床症狀簡介 6 1.6. 牛流行熱病毒的特性 7 1.7. 牛流行熱病毒之複製過程 9 1.8. 牛流行熱病毒之疫苗 10 貳、研 究 目 的 11 參、材料與方法 12 3.1. 實驗室試劑來源、器材及儀器 12 3.2. 菌種與載體 15 3.3. 細胞株 15 3.4. 病毒株 15 3.5. 細菌培養液 16 3.6. 細胞培養液 16 3.7. 抗生素 16 3.8. 實驗動物 16 3.9. 引子及shRNA合成序列 16 3.10. 哺乳動物細胞的培養程序 17 3.11. 牛流行熱病毒之培養技術 18 3.12. BEFV抗體製備及效價測定分析法 19 3.13. 分子生物學研究之相關技術 21 3.14. BEFV外套膜醣蛋白G基因重組載體製備 24 3.15. shRNAs序列之設計及pU6-shRNA重組載體之製備 27 3.16. 哺乳動物細胞之載體轉染作用(transfection) 29 3.17. shRNAs對於BEFV病毒複製抑制效果分析 30 3.18. SDS-PAGE及免疫雜配法(Immunoblotting)方法 31 3.19. shRNAs載體與G基因共轉染試驗 32 肆、結果 33 4.1. 牛流行熱病毒感染BHK-21細胞病變現象(cytopathic effect, CPE) 33 4.2. 牛流行熱病毒G基因的分析與選殖 33 4.3. siRNA序列設計及比對 33 4.4. 構築siRNA於pENTR/U6的表現載體 34 4.5. 探討不同時間點醣蛋白G基因表現 34 4.6. 成功轉染G基因之穩定性分析 35 4.7. 已轉染pU6-shRNAs細胞株病毒攻毒實驗細胞病變之結果 35 4.8. 已轉染pU6-shRNAs細胞株病毒攻毒實驗病毒G基因表現分析結果 36 4.9. 已轉染shRNA細胞株病毒攻毒實驗病毒效價測定結果 36 4.10. 已轉染三種pU6-shRNAs細胞株病毒攻毒實驗抑制G醣蛋白表現結果 37 4.11. 三種pU6-shRNAs分別與G基因載體共轉染細胞後之抑制結果 37 伍、討論 38 陸、結論 43 柒、參 考 文 獻 44 捌、表 55 玖、圖 60 拾、附表及附圖 85 拾壹、附錄 101 自述 107

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