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研究生: 洪于傑
Hong, Yu-Jie
論文名稱: DNA 轉位酶在複製壓力下的功能
Functional study of DNA translocases during replication stress
指導教授: 廖泓鈞
Liaw, Hung-Jiun
學位類別: 碩士
Master
系所名稱: 生物科學與科技學院 - 生命科學系
Department of Life Sciences
論文出版年: 2020
畢業學年度: 108
語文別: 中文
論文頁數: 44
中文關鍵詞: 複製叉反轉反向複製叉複製壓力
外文關鍵詞: ZRANB3, SMARCAL1, HLTF, fork reversal, replication stress, DNA fiber
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  • ZRANB3、SMARCAL1與HLTF皆屬於在複製壓力時會促進複製叉反轉的轉位酶,反向複製叉結構不僅可以在有複製壓力時保護停滯的複製叉避免其崩毀,也會使複製速度變慢。然而,在有DNA損傷時,這些轉位酶是單獨運作還是共同運作仍是不明瞭的,故而在本次實驗中,我們嘗試將兩種轉位酶剔除,產生HLTF SMARCAL1及HLTF ZRANB3的雙重剔除的細胞株,並測試DNA損傷試劑cisplatin、methyl methanesulfonate (MMS) 和4-Nitroquinoline 1-oxide (4NQO) 對細胞存活能力的影響。除此之外,我們也測試了以MMS誘導複製壓力時對複製進程的影響,我們發現,與HLTF單獨剔除的細胞相比,同時將HLTF與SMARCAL1剔除的細胞,不管在有或無MMS處理的情況下,其複製進程皆會有明顯的減弱。然而,這樣的結果仍續以更多實驗去驗證。

    ZRANB3, SMARCAL1 and HLTF are translocases that promote fork reversal during replication stress. The reversed fork structure not only protect stalled forks from collapse, but also contribute to replication slowing during replication stress. However, it still not clear whether these translocases act alone or work together to respond various types of DNA lesions. In this study, we tried to deplete two translocases by generating HLTF SMARCAL1 and HLTF ZRANB3 double gene-depleted cells. We determined cell survival in respond to various DNA damaging agents including cisplatin, methyl methanesulfonate (MMS), and 4-Nitroquinoline 1-oxide (4NQO). Additionally, we determined progression of replication in response to MMS-induced replication stress. We found that the depletion of HLTF and SMARCAL1 simultaneously further reduced progression of replication both in the absence and presence of MMS, when compared to HLTF-depleted cells. However, more studies will be needed to verify this result.

    中文摘要……………………………………………………………………………………I Extended abstract………………………………………………………………………II 致謝 ………………………………………………………………………………………IX 目錄…………………………………………………………………………………………X 圖目錄……………………………………………………………………………………XII 縮寫表 …………………………………………………………………………………XIII 壹、 前言 1-1-1. 細胞DNA修復 (DNA損傷 repair) ……………………………………1 1-1-2. DNA錯配修復 (Mismatch repair, MMR)………………………………1 1-1-3. 鹼基切除修復 (Base excision repair, BER) ………………………2 1-1-4. 核苷酸切除修復 (Nucleotide excision repair, NER) ……………2 1-1-5. 非同源末端連接 (Non-homologous end-joining, NHEJ)……………3 1-1-6. 同源重組 (Homologous recombination, HR)…………………………4 1-1-7. 後複製修復 (post-replication repair, PRR)………………………5 1-1-8. 參與複製叉反轉 (Fork reversal) 之蛋白質…………………………6 1-2. 研究動機與目的 …………………………………………………………8 貳、實驗材料與實驗方法 2-1. 細胞培養……………………………………………………………………9 2-2. RNA干擾……………………………………………………………………9 2-3. 質體轉染 …………………………………………………………………10 2-4. 以CRISPR/cas9系統產生HLTF knockout ……………………………11 2-5. Trizol RNA提取…………………………………………………………12 2-6. 定量即時聚合酶鏈鎖反應 (Quantitative real time polymerase chain reaction, qRT-PCR)……………………………………………………12 2-7. 蛋白質萃取 ………………………………………………………………14 2-8. 蛋白質定量 protein assay ……………………………………………14 2-9. 西方墨點法 ………………………………………………………………15 2-10. 細胞毒性測試……………………………………………………………17 2-11. DNA纖維…………………………………………………………………17 2-12. 抗sgRNA標定突變HLTF質體製備 ……………………………………18 參、結果 3-1. 將ZRANB3在HONE1與HONE6細胞中剔除………………………………21 3-2. SMARCAL1 knockdown HONE1細胞在MMS處理下的複製進程…………21 3-3. HLTF ZRANB3及HLTF SMARCAL1在HONE1細胞中的雙重剔除 ………22 3-4. HLTF ZRANB3及HLTF SMARCAL1雙重剔除細胞在MMS複製壓力下的複 製進程 ……………………………………………………………………23 3-5. T24細胞之HLTF剔除……………………………………………………23 肆、討論 …………………………………………………………………………………24 伍、參考文獻 ……………………………………………………………………………25

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