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研究生: 曹鳳儒
Tsao, Fong-ju
論文名稱: 點帶石斑幾丁質酶純化、功能分析及基因選殖
Purification, functional analysis and gene cloning of chitinases from orange-spotted grouper (Epinephelus coioides)
指導教授: 楊惠郎
Yang, Huey-lang
學位類別: 碩士
Master
系所名稱: 生物科學與科技學院 - 生物科技研究所
Institute of Biotechnology
論文出版年: 2007
畢業學年度: 95
語文別: 中文
論文頁數: 95
中文關鍵詞: 幾丁質酶幾丁質點帶石斑魚
外文關鍵詞: Orange-spotted grouper, chitin, chitinase
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  • 本實驗以幾丁質酶高保留區域的退化性引子,透過RT-PCR篩得點帶石斑魚兩種幾丁質酶gchi1與gchi2片段基因,經由5’與3’ RACE獲得基因全長,推演出的胺基酸序列,根據資料庫序列比對後,顯示兩者都是屬於醣類水解酵素18家族,其序列亦具有典型的幾丁質酶結構,包括:signal peptide、hinge region、chitin binding domain。以此引子作標幟,發現只在胃部偵測到gchi1與gchi2,再藉由免疫組織化學染色法分析石斑魚胃的組織切片,則進一步指認Gchi與Gchi2表現在胃腺細胞。接著在點帶石斑魚胃之粗萃取蛋白測出具水解幾丁質的活性,進一步以陰離子交換層析管柱及膠體過濾管柱純化出具高活性的幾丁質酶,藉著質譜蛋白質鑑定,以及幾丁質酶抗體免疫原性的辨認,確認純化的幾丁質酶即為所選殖的gchi1基因之蛋白質產物。將Gchi1進行N端定序後,並與上述轉殖得到之基因核酸序列比對,發現其signal peptide已被切除。另外,分析幾丁質酶之表現調控,則是以蝦子餵食點帶石斑魚時發現,gchi1與gchi2 mRNA以及Gchi1表現量都有增加。由於Gchi1與Gchi2在胃腺細胞表現,並且在餵食蝦子時增加表現,故推測Gchi1與Gchi2是作為幫助消化分解幾丁質的幾丁質酶。

    Two chitinase genes (gchi1 and gchi2) were identified from orange-spotted grouper, Epinephelus coioides by RT-PCR. Their full-length cDNAs were obtained by 5’ and 3’ RACE. The deduced amino-acid sequences of grouper chitinase revealed a typical chitinase structure containing glycol-18 domain, signal peptide, a hinge region and chitin binding domain. The gchi1 and gchi2 mRNA were only expressed in the stomach. The localization of Gchi1 and Gchi2 in grouper, according to immunohisochemistry analysis of it’s stomach tissue section proved that Gchi1 and Gchi2 were expressed in the cell of gastric glands. Chitinolytic activities was measured in stomach from grouper. High activity of chitinase was purified from stomach by anion exchange chromatography and gel filtration. By mass protein identification and recognition by chitinase antibody, indicates that the purified chitinase is Gchi1. After sequencing the N-terminal of Gchi1, the result demonstrated that the signal peptide was cleaved. The mRNA and protein expression level of gchi1 and gchi2 can be enhanced by feeding the shrimps, and those result suggest that Gchi1 and Gchi2 is the chitinase for digesting chitin.

    目錄 中文摘要. . . . . . . . . . . . . . . . . . . . .Ⅰ 英文摘要. . . . . . . . . . . . . . . . . . . . .Ⅱ 目錄 . . . . . . . . . . . . . . . . . . . . . . Ⅲ 圖目錄 . . . . . . . . . . . . . . . . . . . . . Ⅴ 表目錄. . . . . . . . . . . . . . . . . . . . . Ⅶ 壹、前言. . . . . . . . . . . . . . . . . . . . . 1 貳、研究背景 一、點帶石斑魚(Epinephelus coioides). . . . . . . 3 (一)物種分類 (二)生態習性 (三)經濟價值 二、幾丁質. . . . . . . . . . . . . . . . . . . . 3 (一)幾丁質的結構 (二)幾丁質的特性 (三)幾丁質的天然分佈 (四)幾丁質的水解產物與水解方法 (五)幾丁質水解產物之應用 三、幾丁質酶. . . . . . . . . . . . . . . . . . . 11 (一)幾丁質酶的天然分佈與功能 (二)幾丁質酶的分類方式 (三)幾丁質酶的結構 四、幾丁質酶在魚類的研究. . . . . . . . . . . . . 15 (一)基因定序 (二)幾丁質酶純化 參、研究策略. . . . . . . . . . . . . . . . . . . 17 肆、實驗材料與方法. . . . . . . . . . . . . . . . 18 伍、實驗結果. . . . . . . . . . . . . . . . . . . 44 陸、討論. . . . . . . . . . . . . . . . . . . . . 53 柒、文獻. . . . . . . . . . . . . . . . . . . . .61 捌、圖表. . . . . . . . . . . . . . . . . . . . . 65

    黃貴民 (1999),實用石斑魚養殖,水產出版社出版
    Aiba, S. (1994) Preperation of N-acetylchitooligosaccharides from lysozymic hydrolysates of partially N-acetylated chitosans. Carbohydr. Res. 261: 297-306.
    Aiba, S. and E. Muraki (1998) Preparation of higher N-acetylchitooligo- saccharides in high yields. In: Advances in Chitin Science (R. H. Chen and H. C. Chen Ed). 3: 89-96. Rita Advertising Co, ROC.
    Austin, P.R., C.J. Brine, J.E. Castle and J.P. Zikakis (1981) Chitin: New facets of research. Science 212:749-53.
    Boot, R.G., G.H. Renkema, A. Strijland, A.J. van Zonneveld and J.M. Aerts (1995) Cloning of a cDNA encoding chitotriosidase, a human chitinase produced by macrophages. J. Biol. Chem. 270:26252-6.
    Boot, R.G., E.F. Blommaart, E. Swart, K. Ghauharali-van der Vlugt, N. Bijl, C. Moe, A. Place and J.M. Aerts (2001) Identification of a novel acidic mammalian chitinase distinct from chitotriosidase. J. Biol. Chem. 276:6770-8.
    Bernard, N. (1991) Sur la function fungicide des bubles d’ophrydees. Am. Sci.Nat. Bot. Paris 14:221-34
    Brunner, K., C.K. Peterbauer, R.L. Mach, M. Lorito, S. Zeilinger, and C.P. Kubicek (2003) The Nag1 N-acetylglucosaminidase of Trichoderma atroviride is essential for chitinase induction by chitin and of major relevance to biocontrol. Curr. Genet. 43:289-95.
    Buchter, R., A. Stromberg, E. Schmelzer and E. Kombrink (1997) Primary structure and expression of acidic (class II) chitinase in potato. Plant Mol. Biol. 35:749-61.
    Clark, J., K. A. Quayle, N. L. Macdonald and J. R. Stark (1988) Metabolism in marine flatfish-V. chitinolytic activities in dover sole, Solea solea (L.). Comp. Biochem. Physiol. 90B: 379-384.
    Debono, M. and R.S. Gordee (1994) Antibiotics that inhibit fungal cell wall development. Annu. Rev. Microbiol. 48:471-97.
    Fange, R., G. Lundblad, J. Lind and K. Slettengren (1979) Chitinolytic enzyme in the digestive system of marine fishes. Marine Biology 53:317-21.
    Fukamizo, T. (2000) Chitinolytic enzymes: catalysis, substrate binding, and their application. Curr. Protein Pept. Sci. 1:105-24.
    Gooday G.W. (1990) The ecology of chitin degradation. Adv. Microb. Ecol. 11:387-430
    Gutowska, M.A., J.C. Drazen and B.H. Robison (2004) Digestive chitinolytic activity in marine fishes of Monterey Bay, California. Comp. Biochem. Physiol. A Mol. Integr Physiol. 139:351-8.
    Henrissat, B. (1991) A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J. 280 ( Pt 2):309-16.
    Hirano S. and Nagao N. (1989) Effects of chitosan, pectic acis, lysozyme, and chitinase on the growth of several phytopathogens. Agr. Bio. Chem. 53:3065-6
    Hoell, I.A., S.S. Klemsdal, G. Vaaje-Kolstad, S.J. Horn and V.G. Eijsink (2005) Overexpression and characterization of a novel chitinase from Trichoderma atroviride strain P1. Biochim. Biophys. Acta. 1748:180-90.
    Hsu, S.C., and J.L. Lockwood (1975) Powdered chitin agar as a selective medium for enumeration of actinomycetes in water and soil. Appl. Microbiol. 29:422-6.
    Huang, X., H. Zhang, K.C. Zen, S. Muthukrishnan, and K.J. Kramer (2000) Homology modeling of the insect chitinase catalytic domain--oligosaccharide complex and the role of a putative active site tryptophan in catalysis. Insect Biochem Mol Biol. 30:107-17.
    Iseli, B., T. Boller and J.M. Neuhaus (1993) The N-terminal cysteine-rich domain of tobacco class I chitinase is essential for chitin binding but not for catalytic or antifungal activity. Plant Physiol. 103:221-6.
    Izume, M. and Othakara, A. (1987) Preparation of D-glucosamine oligosaccharides by the enzymatic hydrolysis of chitosan. Agric. Biol. Chem. 51:1189-91.
    Karasuda, S., K. Yamamoto, M. Kono, S. Sakuda and D. Koga (2004) Kinetic analysis of a chitinase from red sea bream, Pagrus major. Biosci. Biotechnol. Biochem. 68:1338-44.
    Kelkar, H. S., Shanker, V. & Deshpanda, M. V. (1990) Rapid isolation and regeneration of Sclerotium rolfsii protoplasts and their potential application for starch hydrolysis. Enzyme. Microb. Technol. 12:510-4.
    Kim, K.J., Y.J. Yang, and J.G. Kim (2003) Purification and characterization of chitinase from Streptomyces sp. M-20. J Biochem Mol Biol. 36:185-9.
    Knorr, D. (1984) Use of chitinous polymers in food-A challenge for food research and development. Food Tech. 38:85-97
    Kurokawa, T., S. Uji, and T. Suzuki (2004) Molecular cloning of multiple chitinase genes in Japanese flounder, Paralichthys olivaceus. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 138:255-64.
    Marsh, R.S., C. Moe, R.B. Lomneth, J.D. Fawcett and A. Place (2001) Characterization of gastrointestinal chitinase in the lizard Sceloporus undulatus garmani (Reptilia: Phrynosomatidae). Comp Biochem Physiol B Biochem Mol Biol. 128:675-82.
    Matsumiya, M., Y. Arakane, A. Haga, S. Muthukrishnan and K.J. Kramer (2006) Substrate specificity of chitinases from two species of fish, greenling, Hexagrammos otakii, and common mackerel, Scomber japonicus, and the insect, tobacco hornworm, Manduca sexta. Biosci. Biotechnol. Biochem. 70:971-9
    Minke, R. and J. Blackwell (1978) The structure of alpha-chitin. J. Mol. Biol. 120:167-81.
    Molinari, L.M., R.B. Pedroso, O. Scoaris Dde, T. Ueda-Nakamura, C.V. Nakamura and B.P. Dias Filho (2007) Identification and partial characterisation of a chitinase from Nile tilapia, Oreochromis niloticus. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 146:81-7.
    Molano, J., I. Polacheck, A. Duran, and E. Cabib (1979) An endochitinase from wheat germ. Activity on nascent and preformed chitin. J Biol Chem. 254:4901-7.
    Neville, A.C., D.A. Parry and J. Woodhead-Galloway (1976) The chitin crystallite in arthropod cuticle. J Cell Sci. 21:73-82.
    Pantaleone, D., Yalpani, M. and Scollar, M. (1992) Unsusal susceptibility of chitosan to enzymic hydrolysis. Carbohydr. Res. 237:325-32
    Pearlmutter, N.L. and C.A. Lembi (1978) Localization of chitin in algal and fungal cell walls by light and electron microscopy. J Histochem Cytochem. 26:782-91
    Pemberton, J.M., S.P. Kidd and R. Schmidt (1997) Secreted enzymes of Aeromonas. FEMS Microbiol Lett. 152:1-10.
    Perrakis, A., I. Tews, Z. Dauter, A.B. Oppenheim, I. Chet, K.S. Wilson and C.E. Vorgias. (1994) Crystal structure of a bacterial chitinase at 2.3 Å resolution. Structure 2:1169-80.
    Roby, D., A. Gadelle and A. Toppan (1987) Chitin oligosaccharides as elicitors of chitinase activity in melon plants. Biochem Biophys Res Commun. 143:885-92.
    Sakai, K., Najo, F. and Usui, T. (1990) Production and utilization of. oligosaccharides from chitin and chitosan. Depun Kangaku 37:79-86.
    Sakai, K., M. Narihara, Y. Kasama, M. Wakayama and M. Moriguchi (1994) Purification and characterization of thermostable beta-N-acetylhexosaminidase of Bacillus stearothermophilus CH-4 isolated from chitin-containing compost. Appl Environ Microbiol. 60:2911-5.
    Shahidi, F., Arachchi, J.K.V. and Jeon, Y.J. (1999) Food application of chitin and chitosan. Trends in Food Sci. and Technol. 10:37-51.
    Suginta, W., P.A. Robertson, B. Austin, S.C. Fry and L.A. Fothergill-Gilmore (2000) Chitinases from Vibrio: activity screening and purification of chiA from Vibrio carchariae. J Appl Microbiol. 89:76-84.
    Sugita, H. and Ito, Y. (2006) Identification of intestinal bacteria from Japanese flounder (Paralichthys olivaceus) and their ability to digest chitin. Lett. Appl. Microbiol. 43:336-42.
    Suzuki, K., T. Mikami, Y. Okawa, A. Tokoro, S. Suzuki and M. Suzuki (1986a) Antitumor effect of hexa-N-acetylchitohexaose and chitohexaose. Carbohydr Res. 151:403-8.
    Suzuki, K., A. Tokoro, Y. Okawa, S. Suzuki and M. Suzuki (1986b) Effect of N-acetylchito-oligosaccharides on activation of phagocytes. Microbiol Immunol. 30:777-87.
    Synowiecki, J. and Al-Khateeb, N. A. (2003) Production, properties, and some new applications of chitin and its derivatives. Crit. Rev. Food Sci. Nutr. 43:145-71
    Takahashi, Y. (1997) Effect of sonication on the acid degradation of chitin and chitosan. In Advances in Chitin Science; Domard, A., Roberts, G.A.F. and Varum, K.M. Eds., Jacques Andre´ Publisher: Lyon; Vol. 2, 372-7.
    Terakawa, T., Takaya, N., Horiuchi, H., Koike, M. and Takagi, M. (1997) A fungal chitinase gene from Rhizopus oligosporus confers antifungal activity in transgenic tobacco. Plant Cell Reports 16:439-43.
    Tharanathan, R.N. and F.S. Kittur (2003) Chitin--the undisputed biomolecule of great potential. Crit Rev Food Sci Nutr. 43:61-87.
    Tokoro, A., N. Tatewaki, K. Suzuki, T. Mikami, S. Suzuki and M. Suzuki (1988) Growth-inhibitory effect of hexa-N-acetylchitohexaose and chitohexaose against Meth-A solid tumor. Chem Pharm Bull (Tokyo). 36:784-90.
    Tokoro, A., Kobayashi, M., Tatewaki, N., Suzuki, K. and Suzuki, T. (1989) Protective effect of N-acetyl chitohexaose on Listeria monocytogenes infection in mice. Microbiol. Immunol. 33:357-67
    Tsukada, K., T. Matsumoto, K. Aizawa, A. Tokoro, R. Naruse, S. Suzuki and M. Suzuki (1990) Antimetastatic and growth-inhibitory effects of N-acetylchitohexaose in mice bearing Lewis lung carcinoma. Jpn J Cancer Res. 81:259-65.
    Verburg, J.G., and Q.K. Huynh (1991) Purification and characterization of an antifungal chitinase from Arabidopsis thaliana. Plant Physiol. 95:450-455.
    Wang, S. L. and Chang, W. T. (1997) Purification and characterization of two bifunctional chitinases/lysozymes extracellularly produced by Pseudomonas aeruginosa K-187 in a shrimp and crab shell powder medium. Appl. Environ. Microbiol. 63:380-6
    Zheng, Y., S. Zheng, X. Cheng, T. Ladd, E.J. Lingohr, P.J. Krell, B.M. Arif, A. Retnakaran, and Q. Feng (2002) A molt-associated chitinase cDNA from the spruce budworm, Choristoneura fumiferana. Insect Biochem Mol Biol.

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