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研究生: 李璟采
Lee, Ching-Tsai
論文名稱: 創傷弧菌YJ016基因體中一個莢膜合成相關區域基因之分析
Analysis of a region involved in capsular synthesis in the genome of Vibrio vulnificus YJ016
指導教授: 何漣漪
Hor, Lien-I
學位類別: 碩士
Master
系所名稱: 醫學院 - 微生物及免疫學研究所
Department of Microbiology & Immunology
論文出版年: 2006
畢業學年度: 94
語文別: 中文
論文頁數: 65
中文關鍵詞: 莢膜創傷弧菌
外文關鍵詞: capsule, group 1
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  • 莢膜多醣體 (CPS)已知是創傷弧菌感染的重要毒立因子之ㄧ,並且與該菌對小鼠的致命性感染極為相關。創傷弧菌的莢膜多醣體是由酸性的多醣體所構成,在分類上被歸屬於第一群莢膜多醣體。先前我們實驗室藉由比較性基因體雜交以及南方墨點法分析有莢膜菌株和無莢膜菌株在基因上的差異,發現了創傷弧菌YJ016基因體中ORF VV0337到ORF VV0366這段區域裏的基因與創傷弧菌合成莢膜多醣體有關。在本研究中我首先以柏克萊果蠅基因體計劃之神經網路絡啟動子預測軟體進行預測,找到4個可能的啟動子在這段區域之中。另外藉由其他的生物資訊分析軟體找到了Shine-Dalgarno (SD)序列、兩段Rho-independent的終止子,以及一個39 bp稱為JUMPStart的高度保留於多醣體基因群前端的DNA序列。接著,經由反轉錄聚合酶連鎖反應(RT-PCR)發現不管是培養在30℃或是37℃的情況下,這段區域中的29個ORF都會表現。從使用來自相鄰的ORF上的引子進行RT-PCR的結果推測此區域可能包含ORF VV0337~VV0345和ORF VV0347~VV0364兩個操縱子和 ORF VV0365以及ORF VV0366兩個單獨的基因。由ORF VV0349、ORF VV0350、ORF VV0352以及ORF VV0353的註解我們推測它們可能參與在不曾被報導與第一群多醣體共同表現的細胞外多醣體colanic acid的合成。我們將其中的ORF VV0349以對偶基因交換的方式刪除,發現此突變株的菌落變成半透明樣,且對人類血清殺菌反應極具敏感性,顯示了ORF VV0349確實與創傷弧菌莢膜多醣體的合成有關。另一方面,將預測能產生核苷酸去氫酶的ORF VV0365進行刪除,發現此突變株的菌落型態為不透光,且其對人類血清殺菌能力的抗性與野生株YJ016相當,顯示ORF VV0365與創傷弧菌莢膜多醣體的合成無關。我們的研究結果顯示,ORF VV0337到ORF VV0366這個區域確實與創傷弧菌莢膜多醣體的合成相關,而非參與在colanic acid的合成。

    The capsular polysaccharides (CPS) has been shown to be a primary virulence factor of Vibrio vulnificus and correlate with bacterial lethality in mice. CPS of V. vulnificus is composed of acidic polysaccharides, and therefore is classified as group 1. Our laboratory has previously found a region from ORF VV0337 to ORF VV0366 that may be associated with CPS synthesis in the genome of strain YJ016 by comparative genomic hybridization and Southern analysis. In this study, four promoters were predicted in this region by Neural Network Promoter Prediction (NNPP) of Berkeley Drosophila Genome Project. The Shine-Dalgarno sequences, two Rho-independent terminators, and a conserved 39 bp sequence, the JUMPStart sequence, which is involved in the production of various polysaccharides, were also predicted by bioinformatic analyses. The expression of twenty-nine ORFs in this region has been tested by RT-PCR and all were shown to be expressed at both 37℃ and 30℃. Two operons (VV0337~VV0345 and VV0347~VV0364) and two single genes (VV0365 and VV0366) were suggested based on the results of RT-PCR with the primers derived from adjacent ORFs. ORF VV0349, ORF VV0350, ORF VV0352, and ORF VV0353 were annotated as genes involved in the synthesis of an exopolysaccharide, colonic acid, which has not been reported to be coexpressed with the group 1 CPS. One of them, ORF VV0349 was deleted in V. vulnificus, and the VV0349 mutant became translucent and sensitive to human serum bactericidal effect, indicating that this ORF is involved in the synthesis of CPS. On the other hand, ORF VV0365, which may encode nucleotide sugar dehydrogenase, was found to be not required for CPS synthesis, since the VV0365 mutant was opaque in colonial morphology and as resistant to human serum as the parental strain YJ016. Our data demonstrate that the genes in this region are indeed involved in the synthesis of CPS, but not the colonic acid.

    中文摘要 i 英文摘要 ii 目錄 iv 表目錄 vi 圖目錄 vii 符號及縮寫 ix 緒論 1 材料與方法 8 (1) 實驗菌株 8 (2) 實驗菌種培養及其保存 8 (3) 實驗方法 8 DNA序列資料分析 8 核酸技術 9 1. 商業化套件萃取質體DNA 9 2. 小量純化質體DNA 9 3. 創傷弧菌染色體DNA萃取 10 4. 聚合酶連鎖反應 10 5. 限制酶切割DNA 11 6. DNA電泳分析 11 7. DNA片段之分離與回收 11 8. DNA片段之去磷酸化反應 12 9. DNA接合反應 12 10. 細菌RNA萃取 12 11. 細菌RNA反轉錄作用及聚合酶連鎖反應 13 質體轉移方法 13 1. 熱休克轉形作用 13 2. 接合生殖作用 14 (4) 創傷弧菌突變株之製備 15 (5) 細菌對人體血清殺菌作用之抗性 16 (6) 互補作用 16 結果 18 Ⅰ.創傷弧菌莢膜合成相關區域之生物資訊學分析 18 1、 創傷弧菌莢膜合成相關區域內之基因進行BLAST比對之結果 18 2、 promoter region之預測 19 3、 創傷弧菌YJ016與CMCP6莢膜合成相關區域基因之比對 19 Ⅱ、創傷弧菌莢膜合成相關區域基因表現情形 19 Ⅲ、創傷弧菌莢膜合成相關區域基因組成 20 Ⅳ、莢膜多醣體決定基因之探討 21 1、 創傷弧菌VV0349與VV0365突變株之分離 21 2、 創傷弧菌VV0349及VV0365突變株特性分析 22 3、 創傷弧菌ΔVV0349互補株的篩選及特性分析 23 討論 24 參考文獻 30 表 34 圖 45

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