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研究生: 吳欣蓉
Wu, Sin-Rong
論文名稱: CEBPD引發之基因不穩定性於慢性發炎中的機制探討
Characterization of the mechanisms of CEBPD-induced genomic instability in chronic inflammation
指導教授: 王育民
Wang, Ju-Ming
學位類別: 博士
Doctor
系所名稱: 生物科學與科技學院 - 生物資訊與訊息傳遞研究所
Insitute of Bioinformatics and Biosignal Transduction
論文出版年: 2013
畢業學年度: 101
語文別: 英文
論文頁數: 95
中文關鍵詞: CEBPDAURKC慢性發炎TNF alpha腫瘤生成基因不穩定
外文關鍵詞: CEBPD, AURKC, chronic inflammation, TNF alpha, tumorigenesis, genomic instability
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  • 流行病學和臨床研究指出慢性發炎增加某些癌症的風險,可能是藉由影響染色體不穩定。然而,伴隨發炎而引發的染色體不穩定與癌症發生的機轉還沒有被完全地釐清。轉錄因子CCAAT/enhancer binding protein delta (C/EBP, CEBPD) 可被腫瘤壞死因子a(TNF a) 誘導,並且表現在慢性發炎的組織中。在此我們利用HeLa細胞模式,顯示CEBPD參與,至少一部分,TNF a所誘導的基因體不穩定。在本篇研究中發現,降低CEBPD可減少TNF a誘導的非整數倍體細胞。此外,TNF a誘導的CEBPD表現可促使非貼附性生長 (anchorage-independent growth) 增加。我們發現TNF a藉由CEBPD誘導AURKC的表現,而那AURKC也可促使非整數倍體細胞的生成。詳細的機制經由染色質免疫沈澱技術 (chromatin immunoprecipitation assay, ChIP) 和電泳遷移率實驗 (Electrophoretic mobility shift assay, EMSA) 分析證實,結果顯示當處理TNF a時,CEBPD可以直接接合上AURKC的啟動子上,結合的位置在-78~-87和-424~-433區域。而且,CEBPD的高表現與AURKC的表現在發炎的子宮頸組織具有一致性。進一步以酵母菌雜交法 (yeast two-hybrid analysis) 鑑定出一個AURKC的交互作用蛋白,Fanconi anemia zinc finger,FAZF。FAZF具有誘導G1期停滯和凋亡的功能。觀察到AURKC誘使FAZF經由不依賴泛素的降解路徑 (ubiquitin-independent degradation pathway) 降解。這些結果對CEBPD在發炎反應中藉由活化AURKC誘導染色體不穩定的功能提供創新的見解。

    Epidemiologic and clinical research indicates that chronic inflammation increases the risk of certain cancers, possibly through chromosomal instability. However, the mechanism of inflammation-dependent chromosomal instability associated with tumorigenesis is not well characterized. The transcription factor CCAAT/enhancer binding protein delta (C/EBP , CEBPD) is induced by tumor necrosis factor  (TNF  and is expressed in chronically inflamed tissue. Using HeLa cells as a model system, we show here that CEBPD mediates, at least in part, TNF induced genomic instability. In this study, loss of CEBPD attenuated TNF -induced aneuploidy. Additionally, TNF -induced CEBPD expression augmented anchorage-independent growth. We found that TNF  induced expression of aurora kinase C (AURKC) through CEBPD, and that AURKC also causes aneuploidy. The detailed mechanism was confirmed by ChIP (chromatin immunoprecipitation assay) and EMSA (Electrophoretic mobility shift assay), and these results indicated that CEBPD can directly bind to AURKC promoter via-78~-87 and -424~-433 regions when treated with TNF. Furthermore, a high CEBPD expression level was correlated with AURKC expression in inflamed cervical tissue specimens. An AURKC-interacting protein, Fanconi anemia zinc finger, FAZF, was identified using yeast two-hybrid analysis. FAZF induces G1 arrest and apoptosis. It is observed that AURKC induced the degradation of FAZF through a ubiquitin-independent degradation pathway. These data provide insight into a novel function for CEBPD in inducing genomic instability through the activation of AURKC expression in response to inflammatory signals.

    Abstract I Abstract in Chinese II Acknowledgments III Contents IV List of Figures VIII List of Appendices X Abbreviation list XI Chapter 1 Introduction 1 1.1 Tumorigenesis 1 1.2 Genomic instability and tumorigenesis 1 1.3 Inflammation and Tumorigenesis 2 1.4 TNF and Tumorigenesis 3 1.5 TNF signalling involved in Tumorigenesis 4 1.6 CCAAT/Enhancer binding protein delta (CEBPD) 6 1.6.1 CEBPD and inflammation 6 1.6.2 The dual role of CEBPD in tumorigenesis 7 1.7 Aurora kinase family 7 1.8 Zinc finger and BTB domain containing 32 (ZBTB32, FAZF) 9 1.9 Significance and novelty 10 Chapter 2 Materials and methods 11 2.1 Materials 11 2.2 Methods 12 2.2.1 Immunofluorescence assay and time-lapse microscopy analysis 12 2.2.2 Chromatin immunoprecipitation (ChIP) 13 2.2.3 Cell culture and establishment of stable cell lines 13 2.2.4 Reverse transcription (RT)-PCR analysis 14 2.2.5 Cell cycle analyses 14 2.2.6 Soft agar assay 15 2.2.7 Plasmid transfection and reporter gene assay 15 2.2.8 Short hairpin RNA (shRNA) lentivirus production 16 2.2.9 Titration of lentivirus GFP vector 17 2.2.10 Genomic instability as measured the population of GFP positivity 17 2.2.11 Reverse-transcription and quantitative polymerase chain reaction (RT-qPCR) analysis 18 2.2.12 Electrophoretic mobility shift assay (EMSA) 19 2.2.13 Western blotting 19 2.2.14 Immunoprecipitation assay (IP) 19 2.2.15 Protein stability assay 20 Chapter 3 Results 21 3.1 Long-term TNF treatment induces aneuploidy in HeLa cells 21 3.2 CEBPD induction contributes to TNF-induced aneuploidy. 21 3.3 CEBPD expression level contributes to TNF-induced transformation 22 3.4 CEBPD activation enhances genomic instability 23 3.5 TNF induces AURKC expression through its promoter activation 24 3.6 AURKC inducts genomic instability 25 3.7 AURKC accelerates cell cycle progression 25 3.8 CEBPD does not co-localize with AURKC 26 3.9 CEBPD induces AURKC expression 26 3.10 CEBPD mediates TNF-induced AURKC 27 3.11 CEBPD directly regulates AURKC promoter activation 28 3.12 Expressions of CEBPD and AURKC are coincident in inflamed cervical tissue 29 3.13 CEBPD-induced AURKC is uncoupled with cell cycle 29 3.14 Identification of a novel AURKC binding protein, FAZF 30 3.15 FAZF responds to TNF and is negatively associated with expression of CEBPD and AURKC 30 3.16 AURKC attenuates FAZF expression 31 3.17 AURKC disturbs FAZF stability 31 3.18 AURKC promotes ubiquitin-independent degradation of FAZF 32 Chapter 4 Discussion 33 4.1 CEBPD is important to TNF-induced tumorigenesis and genomic instability 33 4.2 Both AURKA and AURKC respond to TNF 35 4.3 AURKC contributes to genomic and centrosomal instability 36 4.4 Inflammation-induced CEBPD expression participates human papillomavirus-mediated tumorigenesis 37 4.5 AURKC supports a link between genomic instability and proliferation in inflammation 38 4.6 The regulation of FAZF 39 4.7 The fate of a cell with abnormal mitosis 41 4.8 Conclusions 42 References 43 Figures 58 Appendixes 89 Curriculum Vitae 95

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