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研究生: 陳志誠
Chen, Jhih-Cheng
論文名稱: 發展低度和高度子宮內膜基質惡性肉瘤融合基因檢驗
The development of a fusion gene test for low-grade and high-grade endometrial stromal sarcoma
指導教授: 何中良
Ho, Chung-Liang
學位類別: 碩士
Master
系所名稱: 醫學院 - 醫學檢驗生物技術學系
Department of Medical Laboratory Science and Biotechnology
論文出版年: 2020
畢業學年度: 108
語文別: 中文
論文頁數: 70
中文關鍵詞: 子宮肉瘤子宮內膜基質惡性肉瘤(ESS)融合基因分子檢測人造融合基因質體
外文關鍵詞: Uterine sarcoma, Endometrial stromal sarcoma (ESS), Fusion gene, Molecular testing, Artificial fusion constructs
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  • 子宮內膜基質惡性肉瘤是源自於子宮內膜基質的腫瘤,根據2014年世界衛生組織(WHO)分類將子宮內膜基質瘤(Endometrial stromal tumor; EST)分為四個種類:子宮內膜基質結節(ESN)、低度子宮內膜基質肉瘤(LG-ESS)、高度子宮內膜基質肉瘤(HG-ESS)以及未分化的子宮肉瘤(UUS)。低度和高度子宮內膜基質肉瘤(ESS)在子宮惡性腫瘤中很少見,不到全部子宮惡性腫瘤的1%。ESN常屬於良性腫瘤,而ESS則是屬於惡性的腫瘤,但長久以來LG-ESS以及ESN在組織學型態上很相似不易單靠型態去區分兩者。而在ESS中LG-ESS和HG-ESS組織病理學的異質性,僅憑形態很難診斷區分這些腫瘤,因此若能開發出分子檢測的方式協助ESS的診斷,將會是一大利器。目前已有研究鑑定出七種融合基因與ESS相關,其中 六種屬於LG-ESS,分別為JAZF1-SUZ12、JAZF1-PHF1、EPC1-PHF1、MEAF6-PHF1、ZC3H7B-BCOR和MBTD1-CXorf67;而另外一種YWHAE-NUTM2A/B則是屬於HG-ESS。由於子宮內膜基質肉瘤非常罕見,因此開發分子檢測方法首先會面臨到無可用於檢測七種融合基因之RT-PCR陽性對照組。有鑑於此,在本研究中,我們開發了上述七種融合基因的分子檢測方法,以克隆(Clone)的方式,為七種融合基因製作了人造融合基因質體,並為融合基因分別設計了診斷用引子。同時,我們也收錄了來自成功大學附設醫院的12個病患,將診斷用引子實際應用於臨床檢體之檢測。12個病患中有5個病患使用我們的檢測方法測出融合基因型,且經過定序驗證,結果與先前的研究相近。ESS中最常見的融合基因型為JAZF1-SUZ12,其次為JAZF1-PHF1融合基因型,在5例陽性的病患中前者有3例,而後者則有1例,另外我們還鑑別出了1例YWHAE-NUTM2A/B的HG-ESS。而我們所建立的檢測ESS融合基因的模式將來也可以應用於檢測其他融合基因。

    The World Health Organization (WHO) has classified endometrial stromal sarcoma into two categories as low-grade endometrial stromal sarcoma (LG-ESS) and high-grade endometrial stromal sarcoma (HG-ESS) in 2014. Both low-grade and high-grade endometrial stromal sarcoma (ESS) are not common in uterine malignancies, which are less than 1 percent of uterine malignancy. Due to the heterogeneous histopathology of LG-ESS and HG-ESS, these tumors are not easily to diagnose only by morphology. Molecular testing is gaining more and more significant for ESS diagnosis. According to previous literature, 7 types of fusion genes have been identified; 6 belongs to low-grade ESS (JAZF1-SUZ12, ZC3H7B-BCOR, JAZF1/PHF1, EPC1/PHF1, MEAF6/PHF1, and MBTD1-CXorf67) and 1 belongs to high-grade ESS (YWHAE/NUTM2A/B). Since the endometrial stromal sarcoma are very rare, there was no positive control material available from tumor tissues for the development of all 7 RT-PCR tests. Therefore, we made artificial fusion constructs for each 7 fusion genes and design diagnostic primer pairs for these fusion genes. In our study, we used primer pairs to diagnose clinical specimens and our twelve patients are all from National Cheng Kung University Hospital (NCKUH). The detecting method which we had developed to detect ESS fusion gene can also be applied to other fusion genes in the future.

    目錄 中文摘要 I 英文延伸摘要(Extended abstract) III 致謝 XII 目錄 XIII 表目錄 XV 圖目錄 XVI 第一章.緒論 1 (一) 子宮內膜基質惡性肉瘤簡介 1 (二) 子宮內膜基質惡性肉瘤的特徵 1 1. 免疫組織化學染色(Immunohistochemistry;IHC) 1 2. 細胞形態學 2 (三) 預後及治療方式 2 1. 預後 2 2. 治療方法 2 (四) 融合基因簡介 2 (五) 子宮內膜基質惡性肉瘤與融合基因的相關性 3 (六) 七種融合基因中各基因的簡介 3 1. JAZF1 3 2. SUZ12 4 3. EPC1 4 4. PHF1 4 5. MBTD1 4 6. CXorf67 4 7. MEAF6 5 8. ZC3H7B 5 9. BCOR 5 10. YWHAE 5 11. NUTM2A/B 6 (七) 融合基因的檢測方法 6 1. 螢光原位雜交(Fluorescent in situ hybridization;FISH) 6 2. 反轉錄聚合酶連鎖反應(Reverse transcription polymerase chain reaction;RT-PCR) 6 (八) 實驗目的 6 第二章.實驗材料與方法 9 1. RNA萃取 (RNA extraction) 9 2. 反轉錄合成 (Reverse transcription reaction) 9 3. 聚合酶連鎖反應 (Polymerase chain reaction) 10 4. 臨床檢體PCR 10 5. DNA gel製備 (agarose gel) 11 6. DNA純化 (DNA purification) 11 7. 核酸接合作用 (DNA Ligation) 11 8. 轉型作用 (Transformation) 11 9. 質體抽取 (Plasmid DNA extraction) 12 10. 限制酶切割DNA (Restriction Enzyme) 12 11. 質體DNA去磷酸化反應 (Dephosphorylation) 12 12. 定序 (Sequencing) 12 13. 勝任細胞製備 (Competent cell) 12 14. LB培養基製備 13 15. 靈敏度測試 (Sensitivity test) 13 16. Multiplex PCR 13 17. 臨床檢體 14 18. 人造融合基因質體製作流程 14 第三章.實驗結果 18 (一) 人造融合基因質體作為陽性對照組測試診斷引子靈敏度 18 1. YWHAE-NUTM2A/B靈敏度測試結果 18 2. ZC3H7B-BCOR靈敏度測試結果 18 3. MEAF6-PHF1靈敏度測試結果 18 4. JAZF1-PHF1(Three ways of fusion ; 3片段)靈敏度測試結果 18 5. JAZF1-PHF1(Four ways of fusion ; 4片段)靈敏度測試結果 19 (二) 臨床檢體的結果 19 第四章.討論 21 (一) 臨床檢體與先前文獻結果比較 21 (二) 採用Mutiplex PCR的方式降低臨床檢體消耗量 22 (三) 檢體使用FFPE來源之檢體 23 (四) 延伸應用 23 第五章.參考文獻 24 第六章.表 27 第七章.圖 35 第八章.附錄 57

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