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研究生: 洪惠瑩
hong, huei-ying
論文名稱: Cytochrome P450 BM-3 作為烷烴化合物的催化試劑
Utilization of Cytochrome P450 BM3 as The Biocatalysts for Aliphatic Compounds Activation
指導教授: 黃得時
Huang, Ded-Shih
俞聖法
Yu, Sheng-Fa
學位類別: 碩士
Master
系所名稱: 理學院 - 化學系
Department of Chemistry
論文出版年: 2007
畢業學年度: 95
語文別: 中文
論文頁數: 104
中文關鍵詞: 細胞色素
外文關鍵詞: P450 BM3
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  • 來自Bacillus megaterium的細胞色素P450 BM3對受質是非常有專一性的,使用大氣中的氧氣當作氧化劑,除天然受質:脂肪酸外幾乎不接受其他的化合物。我們成功的從大腸桿菌中表現P450 BM3並且藉由金屬離子親和層析管柱純化具有His-tag的重組蛋白質。在大腸桿菌內大量表現的P450 BM3依然具有活性,且輔因子也一同被表現。這個蛋白質在加入NADPH即可催化脂肪酸。從UV/visible光譜分析中, 此His-tagged P450 BM3 內依然保有鐵的存在,且從GC/MS分析得知,此His-tagged P450 BM3也具有催化的能力。
    接著,我們利用定點突變的方法改變P450 BM3的三個胺基酸序列(Leu188Gln, Phe87Val, Ala74Gly),這個突變過後的蛋白質內依然含鐵。
    辛烷並不會被原生型的P450 BM3所氧化,但是此P450 BM3 mutant可以將辛烷氧化成2-辛醇, 3-辛醇, 和4-辛醇。P450 BM3 mutant也可以催化含氟的化合物,實驗結果提供我們有用的資訊在於設計新的含氟探針,以便測試P450系統對甲烷催化的能力。

    Cytochrome P450 BM3 from Bacillus megaterium display a rather narrow substrate specificity. It can only hydroxylates fatty acid by using atmospheric dioxygen as an oxidant. We successfully expressed and purified the recombinant His-tagged protein (P450 BM3) from E. coli. by a simple metal-affinity chromatography. The hydroxylate activity is retained in E. coli., where the engineered P450 BM3 can be expressed at high levels and the cofactor is supplied endogeneously. This protein can retain its hydroxylate function to catalyze the fatty acid-dependent oxidation of reduced nicotinamide adenine dinucleotide phosphate (NADPH). From UV/visible, the His-tagged P450 BM3 obtains heme. From GC/MS, the His-tagged P450 BM3 is characterized enzymeologically.
    And then we engineer P450 BM3 using site-directed mutagensis. A triple mutant P450 BM3 (Leu188Gln, Phe87Val, Ala74Gly) also obtains heme. Octane is not oxidized by the wild-type enzyme, but this mutant hydroxylates octane to 2-octanol, 3-octanol, and 4-octanol. P450 BM3 mutant also has the capability to hydroxylate fluorinated compound. The outcome supplied us some imperative information to design new fluorinated probes towards direct evolving the P450 system for methane activation utilities.

    目錄 目錄 7 第一章 序論 10 1. BACILLUS MEGATERIUM (巨大芽胞桿菌) 10 2.P450 SUPERFAMILY的分類: 11 3. CYTOCHROME P450 BM3 12 4.P450 BM3的催化機制 13 5.研究目的 14 第二章 實驗 16 (一) 藥品試劑 16 (二)儀器設備 20 (三) 實驗步驟 24 1.菌種培養及選種 25 2.放大培養 25 3.錐形瓶放大培養及偵測菌種生長曲線 26 4.離心 26 5.抽取染色體基因( Chromosome DNA Extraction ) 26 6.複製啟動區片段 28 7.純化PCR 產物 31 8.磷酸化PCR 產物 31 9. DNA 載體的準備( Vector Double digestion ) 32 10.DNA嵌入載體(ligation) 35 11.轉殖至表現宿主細胞(transformation) 35 12. 抽取質體DNA 36 13.重組後質體的確認 36 14.轉殖至表現宿主細胞E.coli. BL 21 38 15.誘導表現蛋白質時間及溫度測試 38 16.破菌 39 17.蛋白質分析(protein assay) 39 18.蛋白質電泳 40 19.蛋白質大量表現 44 20.大量破菌 44 21.純化蛋白質P450 BM3 45 22.蛋白質定性 46 23. 分析NADPH消耗速度 46 24.Myristic acid hydroxylation reaction 47 25.Site-Directed Mutagenesis(A74G F87V L188Q) 51 26.PCR時間及溫度控制如下表: 53 27.Dpn I Digestion of the Amplification Products 55 28.誘導表現蛋白質時間測試 56 29.純化 56 30.P450 BM3 mutant定性 57 31.分析NADPH消耗速度 57 32.分析P450 BM3 mutant活性 57 33.利用含氟化合物來測試P450 BM3 mutant的活性 60 第三章 結果與討論 61 1. BACILLUS MEGATERIUM培養 61 2. 抽取染色體基因 62 3.複製轉錄調控因數啟動區 62 4.DNA嵌入表現載體鑑定 65 5.蛋白質分析(PROTEIN ASSAY) 67 6.誘導溫度及時間對蛋白質P450 BM3表現影響的分析 68 7.純化大量蛋白質P450 BM3 70 8.蛋白質P450 BM3定性 74 9. 分析NADPH消耗速度 75 10.誘導時間對蛋白質P450 BM3 MUTANT表現影響的分析 76 11. 純化大量蛋白質P450 BM3 MUTANT 77 12.蛋白質P450 BM3MUTANT定性 78 13.分析NADPH消耗速度 79 第四章 結論 81 第五章 參考文獻 82 【附錄一】 85 【附錄二】 92 【附錄三】 93 【附錄四】 95 【附錄五】 97 【附錄六】 99 【附錄七】 101 【附錄八】 103

    (1) Appel, D., Lutz-Wahl, S., Fischer, P., Schwaneberg, U., and Schmid, R. D. (2001) A P450 BM-3 mutant hydroxylates alkanes, cycloalkanes, arenes and heteroarenes. J Biotechnol 88, 167-71.
    (2) Budde, M., Morr, M., Schmid, R. D., and Urlacher, V. B. (2006) Selective hydroxylation of highly branched fatty acids and their derivatives by CYP102A1 from Bacillus megaterium. Chembiochem 7, 789-94.
    (3) Cirino, P. C., Tang, Y., Takahashi, K., Tirrell, D. A., and Arnold, F. H. (2003) Global incorporation of norleucine in place of methionine in cytochrome P450 BM-3 heme domain increases peroxygenase activity. Biotechnol Bioeng 83, 729-34.
    (4) Farinas, E. T., Schwaneberg, U., Glieder, A., and Arnold, F. H. (2001) Directed evolution of a cytochrome P450 monooxygenase for alkane oxidation. Adv. Synth. Catal. 343, 601-606.
    (5) Glieder, A., Farinas, E. T., and Arnold, F. H. (2002) Laboratory evolution of a soluble, self-sufficient, highly active alkane hydroxylase. Nat Biotechnol 20, 1135-9.
    (6) Lee, T. R., Hsu, H. P., and Shaw, G. C. (2001) Transcriptional regulation of the Bacillus subtilis bscR-CYP102A3 operon by the BscR repressor and differential induction of cytochrome CYP102A3 expression by oleic acid and palmitate. J Biochem (Tokyo) 130, 569-74.
    (7) Lentz, O., Urlacher, V., and Schmid, R. D. (2004) Substrate specificity of native and mutated cytochrome P450 (CYP102A3) from Bacillus subtilis. J Biotechnol 108, 41-9.
    (8) Li, Q. S., Schwaneberg, U., Fischer, P., and Schmid, R. D. (2000) Directed evolution of the fatty-acid hydroxylase P450 BM-3 into an indole-hydroxylating catalyst. Chemistry 6, 1531-6.
    (9) Maurer, S. C., Schulze, H., Schmid, R. D. and Urlacher, V. (2003) Immobilisation of P450 BM-3 and an NADP+ Cofactor Recycling System: Towards a Technical Application of Heme-containing Monooxygenases in Fine Chemical Synthesis. Adv. Synth. Catal. 345, 802-810.
    (10) Meinhold, P., Peters, M. W., Hartwick, A., Hernandez, A. R., and Arnold, F. H. (2006) Engineering cytochrome P450 BM3 for terminal alkane hydroxylation. Adv. Synth. Catal. 348, 763-772.
    (11) Meinhold, P., Peters, M. W., Chen, M. M., Takahashi, K., and Arnold, F. H. (2005) Direct conversion of ethane to ethanol by engineered cytochrome P450 BM3. Chembiochem 6, 1765-8.
    (12) Miles, J. S., Munro, A. W., Rospendowski, B. N., Smith, W. E., McKnight, J., and Thomson, A. J. (1992) Domains of the catalytically self-sufficient cytochrome P-450 BM-3. Genetic construction, overexpression, purification and spectroscopic characterization. Biochem J 288 ( Pt 2), 503-9.
    (13) Noble, M. A., Miles, C. S., Chapman, S. K., Lysek, D. A., MacKay, A. C., Reid, G. A., Hanzlik, R. P., and Munro, A. W. (1999) Roles of key active-site residues in flavocytochrome P450 BM3. Biochem J 339 ( Pt 2), 371-9.
    (14) Ost, T. W., Miles, C. S., Munro, A. W., Murdoch, J., Reid, G. A., and Chapman, S. K. (2001) Phenylalanine 393 exerts thermodynamic control over the heme of flavocytochrome P450 BM3. Biochemistry 40, 13421-9.
    (15) Peters, M. W., Meinhold, P., Glieder, A., and Arnold, F. H. (2003) Regio- and enantioselective alkane hydroxylation with engineered cytochromes P450 BM-3. J Am Chem Soc 125, 13442-50.
    (16) Raner, G. M., Hatchell, J. A., Dixon, M. U., Joy, T. L., Haddy, A. E., and Johnston, E. R. (2002) Regioselective peroxo-dependent heme alkylation in P450(BM3)-F87G by aromatic aldehydes: effects of alkylation on cataysis. Biochemistry 41, 9601-10.
    (17) Ruettinger, R. T., Wen, L. P., and Fulco, A. J. (1989) Coding nucleotide, 5' regulatory, and deduced amino acid sequences of P-450BM-3, a single peptide cytochrome P-450:NADPH-P-450 reductase from Bacillus megaterium. J Biol Chem 264, 10987-95.
    (18) Schneider, S., Wubbolts, M. G., Sanglard, D. and Witholt, B. (1998) Production of chiral hydroxy long chain fatty acids by whole cell biocatalysis of pentadecanoic acid with an E. coli recombinant containing cytochrome P450BM-3 monooxygenase. Tetrahedron: Asymmetry 9, 2833-2844.
    (19) Schwaneberg, U., Schmidt-Dannert, C., Schmitt, J., and Schmid, R. D. (1999) A continuous spectrophotometric assay for P450 BM-3, a fatty acid hydroxylating enzyme, and its mutant F87A. Anal Biochem 269, 359-66.
    (20) Schwaneberg, U., Sprauer, A., Schmidt-Dannert, C., and Schmid, R. D. (1999) P450 monooxygenase in biotechnology. I. Single-step, large-scale purification method for cytochrome P450 BM-3 by anion-exchange chromatography. J Chromatogr A 848, 149-59.
    (21) Seelbach, K., Riebel, B., Hummel, W., Kula, M.R., Tishkov, V. I., Egorov, A. M., Wandrey, C. and Kragl, U. (1996) A novel, efficient regenerating method of NADPH using a new formate dehydrogenase. Tetrahedron Letters 37, 1377-1380.
    (22) Shih, Y. P., Kung, W. M., Chen, J. C., Yeh, C. H., Wang, A. H., and Wang, T. F. (2002) High-throughput screening of soluble recombinant proteins. Protein Sci 11, 1714-9.
    (23) Tishkov, V. I., Galkin, A. G., Fedorchuk, V. V., Savitsky, P. A., Rojkova, A. M., Gieren, H., and Kula, M. R. (1999) Pilot scale production and isolation of recombinant NAD+- and NADP+-specific formate dehydrogenases. Biotechnol Bioeng 64, 187-93.
    (24) Wen, L. P., and Fulco, A. J. (1987) Cloning of the gene encoding a catalytically self-sufficient cytochrome P-450 fatty acid monooxygenase induced by barbiturates in Bacillus megaterium and its functional expression and regulation in heterologous (Escherichia coli) and homologous (Bacillus megaterium) hosts. J Biol Chem 262, 6676-82.

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