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研究生: 戴思平
Tai, Szu-Ping
論文名稱: A 型流感病毒H3N2亞型非結構性蛋白1之基因差異對病毒特性的影響
The effect of NS1 genetic variations on H3N2 influenza A virus properties
指導教授: 王貞仁
Wang, Jen-Reng
學位類別: 碩士
Master
系所名稱: 醫學院 - 醫學檢驗生物技術學系
Department of Medical Laboratory Science and Biotechnology
論文出版年: 2021
畢業學年度: 109
語文別: 英文
論文頁數: 68
中文關鍵詞: 流感病毒非結構性蛋白1拮抗宿主免疫反應
外文關鍵詞: Influenza virus, NS1, counteract host immune responses
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  • 摘要 I Abstract II Acknowledgements IV Table of contents V List of tables VIII List of figures IX List of appendix figures X Abbreviations XI Chapter 1 Introduction 1 1.1 Introduction of influenza viruses 1 1.1.1 Classification and structure of influenza viruses 1 1.1.2 Epidemiology and clinical manifestations of influenza viruses 1 1.1.3 Evolution of influenza A viruses 1 1.2 Influenza virus replication cycle 2 1.2.1 Virus attachment and fusion 2 1.2.2 Virus replication transcription and translation 3 1.2.3 Assembly and budding of virus particles 4 1.2.4 Immunomodulation of virus non-structural protein 4 1.3 Significance of genetic changes in influenza A virus 5 1.3.1 Surface protein gene alteration 5 1.3.2 Internal protein gene evolution 6 1.4 Host innate immune response against influenza virus infection 6 1.5 Characteristics of Influenza non-structural protein 1 (NS1) 7 1.5.1 Sequences, structure and functional domain of NS1 7 1.5.2 Function of NS1 8 1.6 Specific aims 10 Chapter 2 Materials and Methods 12 2.1 Materials 12 2.1.1 Cell line 12 2.1.2 Competent cell 12 2.1.3 Primers 12 2.1.4 Plasmids 13 2.1.5 Enzymes 13 2.1.6 Chemicals and reagents 14 2.1.7 Buffers and solutions 15 2.1.8 Kits 15 2.1.9 Antibodies 16 2.1.10 Instruments 16 2.2 Methods 17 2.2.1 Cell culture 17 2.2.2 NS1 sequencing 17 2.2.3 Phylogenetic analysis 17 2.2.4 Construction of NS1 expression plasmid 18 2.2.5 Generation of reverse genetics viruses 18 2.2.6 IFN-β reporter assay 18 2.2.7 Western blotting 19 2.2.8 Plaque assay 19 2.2.9 Virus growth kinetics 19 2.2.10 Quantitative RT-PCR 20 2.2.11 IFN-sensitivity assay 20 2.2.12 IFN-β ELISA 20 2.2.13 Statistical Analysis 21 Chapter 3 Results 22 3.1 Genetic evolution of H3N2 NS1 gene of NCKUH isolates from 1999 to 2019 22 3.1.1 Collection of NS1 gene sequences of H3N2 viruses 22 3.1.2 Phylogenetic analysis of NS1 gene 22 3.1.3. Analysis of NS1 amino acid substitutions 23 3.2 Determining the effects of genetic variations on NS1 function 23 3.2.1 Analyzing the effect of NS1 substitutions on inhibiting IFN-β promoter activation 23 3.2.2 Generation of reverse genetics viruses 24 3.2.3 Analysis of genetic variations of NS1 on virus’ inhibition of IFN-β promoter activation 24 3.2.4 Analyze the effect of substitutions on NS1 inhibition of IFN-β protein production 26 3.2.5 Analyze the effect of NS1 substitutions on inhibition of IFN-β downstream interferon stimulated genes (ISGs) transcription 26 3.3 To determine whether NS1 genetic variation affects viral properties 27 3.3.1 Analyze the impact of NS1 substitutions on viral growth in A549 cells 27 3.3.2 Analyze the impact of NS1 substitutions on virus sensitivity to IFN 27 3.3.3 Analyze the impact of NS1 substitutions on viral growth in Vero cells 27 Chapter 4 Discussion and Conclusions 29 References 33

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