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研究生: 方巧筑
Fang, Qiao-Zhu
論文名稱: 運用代謝體學評估飲食與農藥暴露對於糖尿腎臟病疾病進程之影響
Evaluating the Influence of Dietary Patterns and Pesticide Exposure on Diabetic Kidney Disease Progression Through Metabolomics
指導教授: 陳秀玲
Chen, Hsiu-Ling
學位類別: 碩士
Master
系所名稱: 醫學院 - 食品安全衛生暨風險管理研究所
Department of Food Safety / Hygiene and Risk Management
論文出版年: 2026
畢業學年度: 115
語文別: 中文
論文頁數: 193
中文關鍵詞: 糖尿腎臟病 、慢性腎臟病 、代謝體學 、UHPLC-Orbitrap-MS 、生物標記 、精準醫療
外文關鍵詞: Diabetic Kidney Disease, Chronic kidney disease, Metabolomics, UHPLC-Orbitrap- MS, Biomarkers, Precision medicine
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  • 糖尿腎臟病 (Diabetic Kidney Disease, DKD) 是全球慢性腎臟病 (Chronic Kidney Disease, CKD) 的主要成因之一,影響超過 40%的糖尿病患者,並可能進一步發展為末期腎病 (End-Stage Kidney Disease, ESKD)。本研究運用非標靶代謝體學分析技術,發掘尿液中的潛在代謝生物標記,以預測 DKD 的進展。
    研究方法包括第三至五期 (eGFR ≤60 mL/min /1.73 m2) 且尚未進行透析治療(血液透析、腹膜透析)、腎臟移植之 DKD 病患100位之飲食暴露問卷調查與尿液樣本收集與分析,並透過 UHPLC-Orbitrap-MS 技術進行代謝體學與農藥暴露分析,以識別農藥暴露與腎功能衰退相關的代謝物變化。
    初步結果顯示,疾病惡化狀況快速下降組與穩定組在人口統計學、臨床特徵、生活方式及飲食習慣上均無顯著差異,可有效降低潛在混淆因子之干擾。在代謝體學分析中,監督式模型(PLS-DA/OPLS-DA)在正、負離子模式下皆成功分離出 DKD 進展者,並偵測到多種具顯著差異的代謝物特徵,反映出與疾病進展相關的獨特代謝轉變。關鍵病理驅動路徑分析顯示,五碳糖與醛糖酸鹽相互轉變顯著驅動早期代謝重塑(p<0.001);抗壞血酸、硫與嘌呤代謝異常反映氧化壓力加劇與腎功能惡化;菸鹼酸/菸醯胺路徑紊亂則證實粒線體功能受損。
    進一步結合多變量機器學習,本研究構建了基於支持向量機(Linear SVM)的預測模型。整合前 36 個權重特徵時,分類準確度達 72.9%,交叉驗證之聯合診斷效能達 AUC 0.823(95% CI: 0.720–0.896),顯著優於單變量標記物 Niacinamide(AUC = 0.748)或 2-Aminoadipic acid(AUC = 0.701)之獨立表現。在農藥暴露方面,雖然總暴露負荷與 DKD 快速惡化未達直接關聯,但兩組間農藥暴露之整體共變異結構具統計學顯著差異,並成功挖掘出 7 組不受腎功能與飲食型態混淆的「代謝物–農藥」相關性,其中胺基酸相關代謝物(Asp-Leu、DL-Arginine、HISTIDINOL)之關聯型態與既有文獻高度呼應。
    透過比較代謝特徵,預期可發掘影響不同類型腎臟病的重要代謝途徑,進一步建立能預測 DKD 進展的生物標記模型。此外,本研究透過分析受測者之飲食型態,探討其與受測者代謝物變化之間的關聯,其結果可識別 DKD 腎功能衰退之生物標記,如Niacinamide、2-Aminoadipic acid,有助於提升早期診斷的準確性,並發展個人化醫療策略,以減緩腎功能衰退進展並降低 ESKD 風險。

    Diabetic kidney disease (DKD) is a leading cause of chronic kidney disease (CKD) and may progress to end-stage kidney disease (ESKD). This study used untargeted metabolomics to identify urinary biomarkers associated with DKD progression. Urine samples and dietary exposure questionnaires were collected from 100 patients with stage 3–5 DKD (eGFR ≤60 mL/min/1.73 m²) without renal replacement therapy. UHPLC-Orbitrap-MS was used for untargeted metabolomic and pesticide exposure analyses. No significant differences in demographic, clinical, lifestyle, or dietary characteristics were observed between rapid-progressors and stable patients. PLS-DA/OPLS-DA identified distinct metabolic profiles between the groups. Key pathways included pentose and aldose interconversion (p<0.001), ascorbate, sulfur, purine, and nicotinate/nicotinamide metabolism, indicating altered oxidative stress and mitochondrial function. A Linear SVM model based on 36 weighted features achieved 72.9% classification accuracy and a cross-validated AUC of 0.823 (95% CI: 0.720–0.896), exceeding the performance of niacinamide (AUC = 0.748) and 2-aminadipic acid (AUC = 0.701). Seven metabolite–pesticide associations were also identified. These findings highlight potential urinary biomarkers and metabolic pathways for predicting DKD progression and supporting early risk stratification.

    摘要 I Abstract III 致謝 VII 總目錄 IX 圖目錄 XII 表目錄 XIII 一、 緒論 1 1-1 研究背景 1 1-2 研究目的 4 二、 文獻回顧 5 2-1 慢性腎臟病 5 2-1.1 慢性腎臟病之介紹 5 2-1.2 國際/臺灣慢性腎臟病之盛行率與發生率 9 2-2 糖尿腎臟病 11 2-2.1 糖尿腎臟病之介紹 11 2-2.2 國際/臺灣糖尿腎臟病之盛行率與發生率 14 2-3 腎臟病之病因、危險與惡化因子 16 2-4 飲食模式與 DKD 的關聯 19 2-4.1 飲食模式於研究應用 19 2-4.2 飲食攝取與疾病生物標記的關聯 20 2-4.4 糖尿腎臟病造成的飲食改變 24 2-5 農藥於全球使用情況 25 2-5.1 農藥類別與施用狀況及危害 25 2-5.2 農藥對腎臟的影響 31 2-5.3 農藥對血糖的影響 33 2-6 代謝體學的應用及發展 35 2-6.1 代謝體學介紹 35 2-6.2 標靶與非標靶代謝體學 37 2-6.3 代謝體學分析方法與流程 39 2-6.4 代謝體學於DKD診斷中之應用與挑戰 43 三、 材料與方法 45 3-1 研究架構 45 3-2 招募對象問卷訪談與生物檢體採集流程 46 3-2.1 對象招募 46 3-2.2 問卷訪談 47 3-2.3 檢體採集流程 48 3-3 生物檢體分析 49 3-3.1 生化指標分析 49 3-3.2 樣本前處理 50 3-3.3 樣品儀器分析 51 3-3.4 品保與品管(QA/QC) 53 3.4 資料處理與特徵萃取(Data Processing and Feature Extraction) 54 3.5 代謝體資料前處理 56 3-5.1 背景訊號(Blank)過濾 56 3-5.2 品質控制樣本(QC)穩定性篩選 56 3-5.3 高缺失率特徵移除 57 3-5.4 缺失值插補(Missing Value Imputation) 57 3-5.5 資料正規化(Normalization) 58 3-5.6 資料轉換與縮放 58 3-5.7 主成分分析(PCA)品質評估 58 3.6 農藥資料庫比對與鑑定 60 3-6.1同位素比對分數篩選(Isotopic Pattern Score Filtering) 60 3-6.2空白樣本扣除(Blank Subtraction) 60 3-6.3技術重複品質檢查(Technical Replicate CV Screening)與資料合併(Replicate Aggregation) 61 3-6.4品管樣本相對標準差篩選(QC RSD Filtering) 61 3-6.5資料正規化和批次效應校正(Normalization and ComBat Batch Correction) 62 3-7 統計分析 63 3-7.1 基本資料與環境飲食問卷統計 63 3-7.2 代謝體學結果統計 65 3-7.3 農藥檢測結果統計 68 四、 結果與討論 70 4-1 基本人口特徵 70 4-2 環境因子暴露分析 73 4-3 飲食習慣與食物攝取頻率分析 75 4-4 尿液代謝體學結果 80 4-5 糖尿腎臟病惡化與農藥代謝物之關係 103 4-5.1 外源性代謝物檢測結果 103 4-5.2 農藥暴露總負擔與巨觀暴露特徵 108 4-5.3 關鍵農藥篩選與農藥—臨床變項相關性 111 4-5.4 農藥共暴露與亞臨床內源性代謝干擾 114 4-6 外部暴露因子與疾病及臨床表型之關聯性探討 122 4-7 糖尿腎臟病與慢性腎臟病之比較 131 五、 結論 134 六、 研究優勢與限制 136 七、 參考文獻 139 八、 附件 174

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