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研究生: 黃彥博
Huang, Yen-Po
論文名稱: 分子馬達酵素蛋白之不可逆性因子耦合器假設
A hypothesis of Irreversibility Coupler on the motor protein
指導教授: 黃明哲
Huang, Ming-Jer
學位類別: 碩士
Master
系所名稱: 工學院 - 工程科學系
Department of Engineering Science
論文出版年: 2006
畢業學年度: 94
語文別: 中文
論文頁數: 79
中文關鍵詞: 熵增分子馬達酵素蛋白線性非平衡態
外文關鍵詞: entropy, linear non equilibrium thermodynamics, enzyme protein, entropy production rate, molecular motor
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  • 生物分子馬達乃一種特殊的酵素蛋白,包含了一般酵素蛋白所具有加速催化受質的能力,以及對外做功的能力。馬達蛋白利用的能量來源乃是儲存於ATP中的化學能。而馬達蛋白的構形在鍵結過程以及催化過程均有所變化,這些變化直接地影響馬達蛋白對外界的出力以及動作狀態,進而使得生物分子馬達得以對外做功。

    本文提出不可逆性因子耦合器的概念,來解釋處於線性非平衡態熱力學過程中的生物分子馬達,在鍵結過程中蒐集系統外界的不可逆性。而處於線性非平衡態區的分子馬達,將會遵循最小熵增定律,因此本文猜測若如本文所言,將可發現熵增穩定以及熵增維持在低值的情況出現。因此我們使用兩篇實驗數據來佐證本文的猜測。

    Molecular motor is a special kind of enzyme protein which is composed of abilities not only accelerating reactions but also working to the surrounding. The energy source is the chemical energy stored in ATP. Conformational changing during the binding and hydrolysis process directly infect the force output and mechanical state, and then, make the work out.
    We proposed the concept of irreversibility coupler to explain the irreversibility collected by the molecular motor from the surrounding during the linear non equilibrium thermodynamics binding process. In this article, we make a coarse prediction.

    We proposed the molecular motor following the Theory of minimum entropy production rate, therefore, the entropy will be linear to the force loading as it raised linearly. Experimental data is confirmed that the prediction of entropy production rate being steady.

    中文摘要………………………………………………………………Ⅰ ABSTRACT ………………………………………………………………Ⅱ 致謝……………………………………………………………………一 目錄……………………………………………………………………二 表目錄…………………………………………………………………五 圖目錄…………………………………………………………………五 符號說明………………………………………………………………七 第一章 緒論……………………………………………………………1 1-1 前言…………………………………………………………………1 1-2 研究動機與目的……………………………………………………2 1-3 文獻回顧……………………………………………………………5 第二章 分子馬達及其運動原理………………………………………7 2-1 生物分子馬達簡介…………………………………………………7 2-1-1 細胞骨架馬達蛋白-肌凝蛋白 ……………………………………10 2-1-2 核酸馬達蛋白-核酸解旋酶………………………………………11 2-1-3 旋轉性馬達蛋白-細菌邊毛馬達…………………………………12 2-1-4 F0F1分子馬達………………………………………………………14 2-1-5 總結…………………………………………………………………15 2-2 分子馬達運動原理簡介………………………………………………16 2-2-1 布朗運動( Brownian Motion )…………………………………………16 2-2-2 布朗棘輪( Brownian Ratchet ) ………………………………………18 2-2-3 動力衝程( Power Stroke ) ……………………………………………19 2-2-4 動力衝程與布朗棘輪的區分………………………………………20 2-3 F1馬達的運動機制……………………………………………………21 2-3-1 β次體與非對稱γ軸………………………………………………22 2-3-2 β次單位的位勢能…………………………………………………24 第三章 線性非平衡態熱力學……………………………………………25 3-1 熱力學第二定律………………………………………………………25 3-2 不可逆性………………………………………………………………33 3-3 現象邏輯方程…………………………………………………………34 3-3-1 力和流………………………………………………………………35 3-3-2 翁薩格倒易關係……………………………………………………40 3-4 居禮-普里高金定理……………………………………………………42 3-5 耗散函數………………………………………………………………43 第四章 模型與推導………………………………………………………47 4-1 不可逆性因子蒐集器模型假設………………………………………47 4-1-1 酵素動力學…………………………………………………………47 4-1-2 酵素熱力學……………………………………………………………49 4-2 模型描述………………………………………………………………50 4-3 模型預測………………………………………………………………56 4-4 實驗數據………………………………………………………………57 第五章 結果與討論………………………………………………………58 5-1 結果討論………………………………………………………………58 第六章 結論與未來研究方向…………………………………………59 6-1 總結………………………………………………………59 6-2 未來研究方向………………………………………………61 參考文獻………………………………………………………………62 自述……………………………………………………………………壹

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