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研究生: 何彥志
Ho, Yen-Chih
論文名稱: TIP60調控范可尼貧血修復機制
The Function of TIP60 in regulation of Fanconi anemia repair pathway
指導教授: 廖泓鈞
Liaw, Hung-Jiun
學位類別: 碩士
Master
系所名稱: 生物科學與科技學院 - 生命科學系
Department of Life Sciences
論文出版年: 2016
畢業學年度: 104
語文別: 中文
論文頁數: 51
中文關鍵詞: 范可尼貧血修復機制同原重組修復機制
外文關鍵詞: TIP60, FANCD2, BRCA1, FA pathway, Cisplatin, DNA repair pathway
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  • 目前在癌症治療研究上遇到的一個主要障礙是,化療藥物會誘導癌細胞產生抗藥性,以本篇論文所使用的順鉑藥物(Cisplatin)而言,其為目前主要用於治療頭頸癌、肺癌、卵巢癌、膀胱癌和睾丸癌的化療藥物,Cisplatin會於DNA雙股之間(interstrand)或單股內(intrastrand)的嘌呤鹼基對(purine base)進行交聯作用(crosslink);先前的研究發現鼻咽癌細胞會藉由同源重組(homologous recombination, HR)、模板交換(template-switching, TS)、范可尼貧血(Fanconi anemia, FA)路徑進行一連串交互作用後提高姐妹染色體交換率(Sister Chromatid Exchange, SCE),使其DNA恢復正常複製,進而導致鼻咽癌細胞產生抗藥性表現。
    本篇研究針對MYST組蛋白乙醯轉移酶家族中的TIP60進行研究,MYST是由一群組蛋白乙醯轉移酶(Histone Acetyltransferase, HAT)所組成,主要參與細胞的轉錄及DNA修復作用;將具抗藥性鼻咽癌細胞(HONE6)中的TIP60基因表現抑制後,於壓力環境下其FA、HR、TS以及TLS細胞修復路徑中,許多基因表現量有明顯下降趨勢,姊妹染色體交換率也顯著下降,於細胞受損情況下觀察其DNA絲,發現複製叉停滯情況也有顯著提升,總總因素導致癌細胞的修復效率降低,進而對Cisplatin產生敏感性;最後進行染色質免疫沉澱(Chromatin immunoprecipitation, ChIP)實驗,發現TIP60會結合到調控FA及HR路徑的關鍵蛋白FAND2及BRCA1的啟動子(promoter)上。
    綜觀上述結果,可以推測TIP60扮演轉錄因子的關鍵角色,藉由和DNA修復路徑相關基因的啟動子進行結合使其表現量上升,進而使癌細胞對化療藥物產生抗藥性。

    Cisplatin can cause interstrand and intrastand crosslinks between purine bases and is a chemotherapeutic drug commonly used to treat cancer. However, the major obstacle for efficacy of the treatment is cisplatin resistance. We recently discovered that chronic treatment of nasopharyngeal carcinoma cells (NPC) with cisplatin induces Fanconi anemia (FA) and homologous recombination (HR) pathways to confer cisplatin resistant phenotype. The histone acetyltransferase (HATs) TIP60 is a member of the MYST family, play an important role in regulating transcription, chromatin remodeling, DNA replication, and DNA repair. Depletion of TIP60 reduces the expression of several genes in FA and HR pathways. In addition, TIP60-deficient NPC cells showing decreased sister chromatid exchange, suggesting reduced homologous recombination. Furthermore, TIP60 binds to the promoter of FANCD2 and BRCA1 by the ChIP experiment. These results suggest that TIP60 regulates the expression of FA and HR-genes, thus regulating DNA damage repair pathway, such as Fanconi anemia repair pathway and homologous recombination to confer cells the cisplatin-resistant phenotype. Targeting TIP60 could be a strategy for treating cisplatin-resistant cancer.

    中文摘要 I Extended abstract II 誌謝 VIII 目錄 IX 圖目錄 XI 縮寫表 XII 壹、緒論 1 第一節 前言 1 1-1. 細胞DNA損害反應(DNA damage response, DDR) 1 1-2. 順鉑(cisplatin)藥物機制與抗藥性機制 1 1-3. 范可尼貧血(Fanconi anemia)修復機制(FA pathway) 2 1-4. 同原重組(homologous recombination, HR)修復機制 4 1-5. TIP60 (KAT5)功能與作用機制 4 1-6. FANCD2及BRCA1功能與作用機制 5 第二節 研究動機與目的 7 貳、實驗材料與方法 8 第一節 實驗材料 8 2-1-1. 人類細胞株 8 2-1-2. 引子(primer)合成 8 2-1-3. shRNA 序列 10 第二節 實驗方法 11 2-2-1. 細胞解凍 11 2-2-2. 細胞繼代培養 11 2-2-3. 凍細胞 12 2-2-4. RNA萃取(RNA isolation) 12 2-2-5. 定量即時聚合酶鏈鎖反應(Quantitative real time polymerase chain reaction, qRT-PCR) 13 2-2-6. Lentiviral製備(Lentiviral production) 14 2-2-7. 測試viral titer. 16 2-2-8. Lentivirus感染人類細胞(Lentiviral Infection) 17 2-2-9. 細胞存活率測定(Cell survival) 17 2-2-10. 蛋白質萃取(protein isolation) 18 2-2-11. 西方墨點法(Western Blot) 18 2-2-12. 姊妹染色分體交換(Sister Chromatid Exchange, SCE) 19 2-2-13. DNA纖維絲(DNA fiber)觀察 21 2-2-14. 免疫螢光染色(Immunofluorescence) 24 2-2-15. 染色質免疫沉澱(Chromatin Immunoprecipitation,ChIP) 25 參、結果 30 3-1. 確認shTIP60慢病毒轉殖進HONE6細胞效率 30 3-2. 抑制TIP60表現會降低HONE6細胞對順鉑(Cisplatin)的抗藥性 30 3-3. HONE6-shTIP60細胞姊妹染色分體交換(sister chromatid exchange, SCE)率下降 31 3-4. HONE6-shTIP60細胞株複製叉停滯現象上升 31 3-5. HONE6-shTIP60細胞在cisplatin壓力環境下γH2AX表現量上 升 32 3-6. HONE6-shTIP60細胞中,許多FA、HR、TS及TLS修復路徑相關 基因表現降低 33 3-7. TIP60會與FANCD2及BRCA1的啟動子結合以調控其表現 34 肆、討論 36 伍、參考文獻 39 Figure 1. TIP60-deficient HONE6 cells are sensitive to cisplatin 43 Figure 2. TIP60-deficient HONE6 cells show decreased frequency of sister chromatid exchange (SCE). 45 Figure 3. TIP60-deficient HONE6 cells show increased stalled replication forks. 46 Figure 4. Cisplatin causes more severe DNA damage in HONE6- shTIP60 cells than HONE6shZ1339 cells. 47 Figure 5. The expression of several genes in the HR, TS, FA and TLS pathways are reduced in HONE6-shTIP60 cells. 49 Figure 6. TIP60 binds to the promoter of BRCA1 and FANCD2 50

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