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研究生: 黃文穎
Huang, Wen-ying
論文名稱: 利用分子生物方法監測煉焦廢水處理中硫氰酸分解菌的社會結構
Monitoring the Dynamic Changes of Thiocyanate Degrading Bacteria in Activated Sludge Reactor Treated with Coking Waste Water
指導教授: 曾怡禎
Tseng, I-cheng
學位類別: 碩士
Master
系所名稱: 生物科學與科技學院 - 生命科學系
Department of Life Sciences
論文出版年: 2007
畢業學年度: 95
語文別: 中文
論文頁數: 37
中文關鍵詞: 16S rRNA gene分子選殖微生物社會硫氰酸分解菌末端螢光標定限制片段多型性分析法 (T-RFLP)
外文關鍵詞: thiocyanate degradation bacteria, 16S rRNA gene clone library, Terminal-restriction fragment length polymorphis, microbial community
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  • 硫氰酸(SCN-)是煉焦廢水中的主要污染物質之一,工業上常利用活性污泥法處理硫氰酸廢水。活性污泥槽常因環境發生變異,影響硫氰酸分解菌之分解能力,因而影響活性污泥槽的處理效率。利用分子生物方法探討硫氰酸分解菌群,追蹤硫氰酸分解菌之消長,可以即時監測活性污泥槽中硫氰酸之分解效能。
    在本研究之汙泥樣本取自台灣南部某鋼鐵廠之VC755B活性污泥槽,利用16S rRNA gene分子選殖技術,建立活性污泥槽之菌群分子選殖資料庫,並利用末端螢光標定限制片段多型性分析法(T-RFLP)即時監測活性污泥槽中硫氰酸分解菌群的結構變化。
    在活性污泥廢水的選殖資料庫中,得知污泥中硫氰酸的主要分解菌屬於Thiobacillus,在clone library中佔26.6%。由T-RFLP結果顯示,Comamonas (30.5%)為活性污泥中最顯著的菌種。活性污泥中主要的菌群包括Thiobacillus(5.3%)、Pseudomonas(19.2%)、Comamonas(30.5%) 和Bacteroidetes(15.8%)。將活性污泥經硫氰酸培養基培養後(九日內馴化三代),微生物族群發生變化。Comamonas被偵測到有消失的情形,而活性污泥中的Thiobacillus由5.3%升高到39.2%,Pseudomonas菌群也由19.2%提升到23.9%。因此藉由T-RFLP的分析,可以有效的偵測到活性污泥樣本中微生物結構的變動。

    Thiocyanate is one of the contaminants in coking waste water, and it usually treated by activated sludge system. When environment condition of activated sludge reactor is changed, the SCN- degrading ability will be influenced. Therefore, cultivation-independent methods were used to study the composition of thiocyanate degrading bacteria and monitor the changes of bacteria in the activated sludge reactor.
    In this study, the sludge samples were taken from VC755B activated sludge reactor of a steel plant in south Taiwan. 16S rRNA gene was used to construct to the clone library of activated sludge and monitor the dynamic changes of bacterial community by terminal-restriction fragment length polymorphism (T-RFLP).
    In 16S rRNA gene clone library of activated sludge, Thiobacillus (26.6%) was the dominant thiocyanate-degradation bacteria in the reactor. T-RFLP electropherograms revealed Comamonas (30.5%) was the dominant bacteria in activated sludge. The major bacteria in the activated sludge included Thiobacillus(5.3%), Pseudomonas(19.2%), Comamonas(30.5%) and Bacteroidetes(15.8%). The sludge was enriched with SCN- (3 subculture in 9 days) and the microbial community. The disappearance of Comamonas was detected and Thiobacillus increased obviously changed in the sludge was obvious from 5.3% to 39.2%. Pseudomonas increased from 19.2% to 23.9%. The changes of microbial community could be detected by T-RFLP.

    摘要 I ABSTRACT II 誌謝 III 目錄 IV 表目錄 VI 圖目錄 VII 第一章 前言 1 1-1研究緣起 1 1-2研究目的 2 1-3研究架構 2 第二章 文獻回顧 3 2-1煉焦廢水成分及污染問題 3 2-2相關硫氰酸分解菌 3 2-3硫氰酸代謝之相關路徑 6 2-4分子生物方法之應用 7 第三章 材料與方法 9 3-1 樣本來源與特性 9 3-2 硫氧化菌的馴養 10 3-2-1 無機鹽培養基 10 3-2-2 硫氰酸分解菌群之馴化培養 11 3-3硫氰酸濃度測定 11 3-3-1 Fe3+ 反應比色法 11 3-4 分子生物技術 11 3-4-1 DNA 萃取 11 3-4-2 RNA 萃取 12 3-4-3 聚合酵素鏈鎖反應 13 3-4-4 RT-PCR 反應 14 3-4-5 16S rRNA gene分子選殖資料庫 15 3-4-6 限制酵素切割片段長度多型性分析 15 3-4-7 末端螢光標定限制酵素片段長度多型性分析法 16 3-4-8 親緣演化樹製作 16 第四章 實驗結果 17 4-1 VC755B曝氣池菌群之親緣演化分析 17 4-2 硫氰酸馴化樣本之親緣演化分析 23 4-3 活性污泥中菌群結構變動之偵測 24 4-3-1 利用T-RFLP分析活性污泥菌群馴養前後之結構 24 4-3-2 硫氰酸分解與硫氰酸分解菌之變動 28 第五章 結論與建議 31 5-1 結論 31 5-2 建議 32 第六章 參考資料 33 自述 37

    趙幼梅和陳文昌,探討煤化學脫硫場尾氣成分對排放水SCN-之影響。中國鋼鐵公司研究報告。高雄市。2001
    吳哲宏,處理煉焦廢水活性污泥系統中SCN-分解菌群基因鑑定。中鋼公司委託研究計畫。高雄市。2006
    申忠哲,處理煉焦廢水之活性污泥槽中硫氰酸分解菌的族群結構之研 究 。國立成功大學生物學研究所碩士論文。2004
    Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J Mol Biol 215, 403-410.(1990)
    Amann, R. I., Ludwig, W. & Schleifer, K. H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59, 143-169.(1995)
    Betts, P. M., Rinder, D. F. & Fleeker, J. R. Thiocyanate utilization by an Arthrobacter. Can J Microbiol 25, 1277-1282.(1979)
    Carpenter, E. J., Lin, S. & Capone, D. G. Bacterial activity in South Pole snow. Appl Environ Microbiol 66, 4514-4517.(2000)
    Chapatwala, K. D., Babu, G. R., Vijaya, O. K., Kumar, K. P. & Wolfram, J. H. Biodegradation of cyanides, cyanates and thiocyanates to ammonia and carbon dioxide by immobilized cells of Pseudomonas putida. J Ind Microbiol Biotechnol 20, 28-33.(1998)
    Dick, L. K. & Field, K. G. Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes. Appl Environ Microbiol 70, 5695-5697.(2004)
    Eder, W., Ludwig, W. & Huber, R. Novel 16S rRNA gene sequences retrieved from highly saline brine sediments of kebrit deep, red Sea. Arch Microbiol 172, 213-218.(1999)
    Elkelboom, D. H. & Geurkink, B. Filamentous micro-organisms observed in industrial activated sludge plants. Water Sci Technol 46, 535-542.(2002)
    Geilhausen, B., Mauff, G., Vlaes, L., Goossens, H. & Butzler, J. P. Restriction fragment length polymorphism for the identification of Campylobacter jejuni-isolates. Zentralbl Bakteriol 274, 366-371.(1990)
    Haddad, A., Camacho, F., Durand, P. & Cary, S. C. Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana. Appl Environ Microbiol 61, 1679-1687.(1995)
    Happold, F. C., Johnstone, K. I., Rogers, H. J. & Youatt, J. B. The isolation and characteristics of an organism oxidizing thiocyanate. J Gen Microbiol 10, 261-266.(1954)
    Herbes, S. E. Rates of Microbial Transformation of Polycyclic Aromatic Hydrocarbons in Water and Sediments in the Vicinity of a Coal-Coking Wastewater Discharge. Appl Environ Microbiol 41, 20-28.(1981)
    Hug, T., Gujer, W. & Siegrist, H. Rapid quantification of bacteria in activated sludge using fluorescence in situ hybridization and epifluorescence microscopy. Water Res 39, 3837-3848.(2005)
    Hummerjohann, J., Kuttel, E., Quadroni, M., Ragaller, J., Leisinger, T. & Kertesz, M. A. Regulation of the sulfate starvation response in Pseudomonas aeruginosa: role of cysteine biosynthetic intermediates. Microbiology 144 ( Pt 5), 1375-1386.(1998)
    Jiang, H. L., Tay, J. H., Maszenan, A. M. & Tay, S. T. Bacterial diversity and function of aerobic granules engineered in a sequencing batch reactor for phenol degradation. Appl Environ Microbiol 70, 6767-6775.(2004)
    Katayama, Y., Narahara, Y., Inoue, Y., Amano, F., Kanagawa, T. & Kuraishi, H. A thiocyanate hydrolase of Thiobacillus thioparus. A novel enzyme catalyzing the formation of carbonyl sulfide from thiocyanate. J Biol Chem 267, 9170-9175.(1992)
    Katayama, Y., Hiraishi, A. & Kuraishi, H. Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with emendation of the genus. Microbiology 141 ( Pt 6), 1469-1477.(1995)
    Kelly, D. P. & Wood, A. P. Confirmation of Thiobacillus denitrificans as a species of the genus Thiobacillus, in the beta-subclass of the Proteobacteria, with strain NCIMB 9548 as the type strain. Int J Syst Evol Microbiol 50 Pt 2, 547-550.(2000)
    Kunz, D. A. & Nagappan, O. Cyanase-mediated utilization of cyanate in Pseudomonas fluorescens NCIB 11764. Appl Environ Microbiol 55, 256-258.(1989)
    Levantesi, C., Beimfohr, C., Geurkink, B., Rossetti, S., Thelen, K., Krooneman, J., Snaidr, J., van der Waarde, J. & Tandoi, V. Filamentous Alphaproteobacteria associated with bulking in industrial wastewater treatment plants. Syst Appl Microbiol 27, 716-727.(2004)
    Manefield, M., Whiteley, A. S., Griffiths, R. I. & Bailey, M. J. RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl Environ Microbiol 68, 5367-5373.(2002a)
    Manefield, M., Whiteley, A. S., Ostle, N., Ineson, P. & Bailey, M. J. Technical considerations for RNA-based stable isotope probing: an approach to associating microbial diversity with microbial community function. Rapid Commun Mass Spectrom 16, 2179-2183.(2002b)
    Manefield, M., Griffiths, R. I., Leigh, M. B., Fisher, R. & Whiteley, A. S. Functional and compositional comparison of two activated sludge communities remediating coking effluent. Environ Microbiol 7, 715-722.(2005)
    Marsh, T. L. Terminal restriction fragment length polymorphism (T-RFLP): an emerging method for characterizing diversity among homologous populations of amplification products. Curr Opin Microbiol 2, 323-327.(1999)
    Mason, F., Harper, D. & Larkin, M. The microbial degradation of thiocyanate. Biochem Soc Trans 22, 423S.(1994)
    Miller, D. N., Bryant, J. E., Madsen, E. L. & Ghiorse, W. C. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl Environ Microbiol 65, 4715-4724.(1999)
    Osborn, A. M., Moore, E. R. & Timmis, K. N. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ Microbiol 2, 39-50.(2000)
    Saitou, N. & Nei, M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.(1987)
    Seefeldt, L. C., Rasche, M. E. & Ensign, S. A. Carbonyl sulfide and carbon dioxide as new substrates, and carbon disulfide as a new inhibitor, of nitrogenase. Biochemistry 34, 5382-5389.(1995)
    Shen, D. S., He, R., Liu, X. W. & Long, Y. Effect of pentachlorophenol and chemical oxygen demand mass concentrations in influent on operational behaviors of upflow anaerobic sludge blanket (UASB) reactor. J Hazard Mater 136, 645-653.(2006)
    Sorokin, D. Y., Tourova, T. P., Lysenko, A. M. & Kuenen, J. G. Microbial thiocyanate utilization under highly alkaline conditions. Appl Environ Microbiol 67, 528-538.(2001)
    Sorokin, D. Y., Tourova, T. P. & Muyzer, G. Citreicella thiooxidans gen. nov., sp. nov., a novel lithoheterotrophic sulfur-oxidizing bacterium from the Black Sea. Syst Appl Microbiol 28, 679-687.(2005)
    Stafford, D. A. & Callely, A. G. The utilization of thiocyanate by a heterotrophic bacterium. J Gen Microbiol 55, 285-289.(1969)
    Stevens, S. J., Verkuijlen, S. A., Brule, A. J. & Middeldorp, J. M. Comparison of quantitative competitive PCR with LightCycler-based PCR for measuring Epstein-Barr virus DNA load in clinical specimens. J Clin Microbiol 40, 3986-3992.(2002)
    Stratford, J., Dias, A. E. & Knowles, C. J. The utilization of thiocyanate as a nitrogen source by a heterotrophic bacterium: the degradative pathway involves formation of ammonia and tetrathionate. Microbiology 140 ( Pt 10), 2657-2662.(1994)
    Suwa, Y., Sumino, T. & Noto, K. Phylogenetic relationships of activated sludge isolates of ammonia oxidizers with different sensitivities to ammonium sulfate. J Gen Appl Microbiol 43, 373-379.(1997)
    Watanabe, K., Teramoto, M. & Harayama, S. An outbreak of nonflocculating catabolic populations caused the breakdown of a phenol-digesting activated-sludge process. Appl Environ Microbiol 65, 2813-2819.(1999)
    Wood, A. P., Kelly, D. P., McDonald, I. R., Jordan, S. L., Morgan, T. D., Khan, S., Murrell, J. C. & Borodina, E. A novel pink-pigmented facultative methylotroph, Methylobacterium thiocyanatum sp. nov., capable of growth on thiocyanate or cyanate as sole nitrogen sources. Arch Microbiol 169, 148-158.(1998)
    Yamasaki, M., Matsushita, Y., Namura, M., Nyunoya, H. & Katayama, Y. Genetic and immunochemical characterization of thiocyanate-degrading bacteria in lake water. Appl Environ Microbiol 68, 942-946.(2002)

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