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研究生: 葉鳴麗
Yeh, Ming-Li
論文名稱: 描述代謝網路之層級式Petri Net模式
Hierarchical Petri Nets for Modeling Metabolic Networks
指導教授: 張玨庭
Chang, Chuei-Tin
學位類別: 碩士
Master
系所名稱: 工學院 - 化學工程學系
Department of Chemical Engineering
論文出版年: 2004
畢業學年度: 92
語文別: 中文
論文頁數: 123
中文關鍵詞: 基因調控代謝反應派屈網路
外文關鍵詞: operon, regulon, Petri Net, modulon
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  •   在本研究中我們利用派屈網(Petri net)發展出系統化建模策略來描述原核生物中包含基因控制機構的生化反應系統之行為。我們首先建構了不同的單元模組來表示細胞中的單元功能,再逐步依層級式結構將之組合而成系統模式。我們利用了幾個虛擬案例來展示了此一模式的用途,並利用四組文獻數據來驗證其正確性,並進一步預測反應系統的動態行為。

      A systematic strategy is developed in the present study to model biological reaction networks in prokaryotes with Petri nets. Component models are first developed to represent the cellular functional units in metabolic networks, i.e., operons, regulons, modulons and individual reactions. A step-by-step procedure is then presented to construct the hierarchical system models accordingly. The usefulness of the proposed model is demonstrated with a fictitious example. The model validity is shown by comparing simulation predictions with experimental data of four distinct systems in the literature.

    目 錄 第一章 緒論……………………………………………1 第二章 代謝網路系統結構…………………………………4 2.1 代謝反應…………………………………………………4 2.2 基質輸送…………………………………………………8 2.3 基因表現…………………………………………………9 2.4 基因調控………………………………………………10 第三章 派屈網模式之建構………………………………18 3.1 派屈網路的基本元素…………………………………18 3.2 單元模組………………………………………………22 3.2.1 代謝反應……………………………………………22 3.2.2 基質輸送……………………………………………23 3.2.3 操縱組………………………………………………24 3.2.4 Modulon與Regulon…………………………………30 3.3建構派屈網模式之步驟………………………………32 3.4 虛擬系統之動態模擬…………………………………42 第四章 原核生物代謝系統模式之驗證……………………53 4.1 酥胺酸反應路徑(threonine pathway)………………53 4.2醣解作用與戊醣磷酸途徑………………………………62 4.3 乳糖操縱組……………………………………………86 4.4乳糖操縱組中的降解物抑制作用和誘導物排除作用103 第五章 結論與展望………………………………………119 5.1 結論…………………………………………………119 5.2展望……………………………………………………119 參考文獻……………………………………………………121

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