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研究生: 翁宸毅
Weng, Cheng-Yi
論文名稱: 多元修飾亞胺醣衍生物之疏水性基團:合成新穎治療高雪氏症之助疊小分子
Diverse modifications of the hydrophobic moiety of iminosugar derivatives: Studies of new chemical chaperones for the treatment of Gaucher disease
指導教授: 鄭偉杰
Cheng, Wei-Chieh
共同指導教授: 黃福永
Huang, Fu-Yung
學位類別: 碩士
Master
系所名稱: 理學院 - 化學系
Department of Chemistry
論文出版年: 2011
畢業學年度: 99
語文別: 中文
論文頁數: 155
中文關鍵詞: 高雪氏症亞胺醣助疊小分子抑制劑
外文關鍵詞: Gaucher disease, iminosugar, chaperone, inhibitor
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  • 高雪氏症是溶小體堆積症中最普遍的疾病,其原因主要是由於溶小體內之葡萄醣腦苷脂酵素之活性不足,進而造成神經鞘脂中之葡萄醣腦苷脂堆積在溶小體內。N-nonyl-deoxynojirimycin (NN-DNJ)為目前科學界公認之參考助疊小分子,其可在次抑制濃度 (subinhibitory concentration)提升特定突變葡萄醣腦苷脂酵素 (N370S)之活性,但其也會抑制溶小體內α-glucosidase之活性進而造成細胞產生副作用。因此我們不但希望發展能夠提升突變酵素活性外,也希望能減少抑制溶小體內α-glucosidase之化學助疊小分子,藉由組合式化學的方式我們以NN-DNJ為參考分子,合成一系列經由多元修飾疏水性基團的亞胺醣衍生物小分子,並同時利用酵素抑制活性檢測出亞胺醣衍生物60, 62與67其皆為相當有效之抑制劑。另外酵素抑制檢測及利用電腦軟體進行配體嵌合預測指出小分子疏水性官能基的部分與抑制酵素的能力皆有一定程度的關聯性。
    亞胺醣衍生物62與67可提升高雪氏症細胞內突變酵素之活性,此外我們再將此助疊小分子62與 67,將其亞胺醣的部分進行多元修飾與其他五環亞胺醣鍵結並保留其疏水性基團,合成出之新穎分子經由細胞生物檢測發現,亞胺醣衍生物69與73不但能提升高雪氏症細胞內突變酵素之活性亦不會抑制溶小體內α-glucosidase之活性,為相當具潛力之助疊小分子。

    Gaucher disease is one of the most prevalent lysosomal storage diseases caused by deficient lysosomal β-glucocerebrosidase (Gcase) activity, which leads to accumulation of the sphingolipid glucoslceramide in the lysosomes. NN-DNJ has been discovered as a chemical chaperone. It raises the folded population of the mutant enzyme (N370S) at subinhibitory concentration. However, it also inhibits the lysosomal α-glucosidase activity which causes some side effects. Therefore, we hope to develop new chemical chaperones not only for potency but also for enzyme selectivity. The lipophilic group of NN-DNJ was modified to a series of derivatives by using combinatorial approach. The results of the enzyme activity evaluation showed that DNJ-based six-membered derivatives 60, 62 and 67 are potent Gcase inhibitors. The preliminary SAR study and computational docking models indicated a correlation between lipophilicity and enzyme inhibiton.
    In our cell-based study (N370S), compounds 62 and 67 showed potent chemical chaperone effects. In addition, we kept the hydrophobic moieties from 62 and 67 and modified the six-membered iminosugar moiety to new five-membered ones, which have not been studied before. Interestingly, several new molecules such as 69 and 73 showed potent chemical chaperone effects and importantly no side effects observed.

    中文摘要I 英文摘要II 誌謝III 目錄V 圖目錄VII 表目錄IX 流程目錄X 中英文對照表XI 簡稱語對照表XII 第一章 緒論 1.1 細胞簡介1 1.2 高雪氏症 (Gaucher disease)的介紹5 1.3 葡萄醣腦苷脂酵素β-glucocerebrosidase (GCase)8 1.4 高雪氏症治療方式9 1.5 亞胺醣作為抑制劑及助疊分子之作用機制14 1.6 研究動機17 第二章 結果與討論 2.1研究組織架構圖18 2.2目標產物之設計概念19 2.3小分子合成討論20 2.4酵素抑制劑活性檢測29 2.5電腦配體嵌合計算35 2.6助疊小分子細胞生物檢驗38 2.7總結44 第三章 實驗部分 3.1實驗藥品及溶劑45 3.2實驗儀器46 3.3實驗步驟與光譜數據46 第四章 參考文獻 參考文獻79 附錄85 圖目錄 圖一. 細胞基本構造圖1 圖二. 蛋白質的合成路徑與輸送圖3 圖三. Glycosphingolipids代謝路徑與疾病關係圖4 圖四. 體染色體隱性遺傳圖5 圖五. 高雪氏症臨床上之表徵7 圖六. 葡萄醣腦苷脂酵素突變與葡萄糖神經醯胺堆積圖8 圖七. 高雪氏症治療方式10 圖八. 助疊小分子幫助葡萄糖神經醯胺降解圖11 圖九. 小分子重疊在β-glucosidase之活性部位圖12 圖十. 小分子與CerezymeTM共結晶結構圖12 圖十一. 疏水性之金剛烷圖12 圖十二. 酵素水解保留機制14 圖十三. 酵素水解反轉機制15 圖十四. 模擬基質過度狀態圖15 圖十五. 助疊小分子幫助摺疊機構圖16 圖十六. 實驗組織架構圖18 圖十七. 分子設計概念圖19 圖十八. 酵素抑制檢測機制圖29 圖十九. L-(1-54)濃度200 μM對β-glucocerebrosidase抑制活性測試30 圖二十. L-(1-54)濃度20 μM對β-glucocerebrosidase抑制活性測試30 圖二十一. 具β-glucocerebrosidase高抑制效果之分子結構30 圖二十二. DNJ-R濃度2 μM對β-glucocerebrosidase抑制活性測試31 圖二十三. 分子群DNJ-R 之結構32 圖二十四. 分子群60及其衍生物對β-glucocerebrosidase抑制活性測試32 圖二十五. 分子群60 及其衍生物之結構33 圖二十六. Lineweaver-Burk double reciprocal plots of化合物60 34 圖二十七. Crystal structure of the NNDNJ-GCase complex (PDB 2V3E)35 圖二十八. Best poses obtained for DNJ-R docked against GCase structure 2V3E 35 圖二十九. DNJ-R與GCase進行電腦配體嵌合計算36 圖三十. 細胞檢驗60,61,62,67其對β-glucocerebrosidase之助疊效應38 圖三十一. 細胞檢驗低濃度67對β-glucocerebrosidase(N370S)之助疊效應39 圖三十二. 細胞檢驗62,67其對溶小體酵素α-glucosidase之選擇性39 圖三十三. 亞胺醣DAB-R, DMDP-R, EDMP-R分子結構圖40 圖三十四. DAB衍生物其對β-glucocerebrosidase (N370S)之助疊效應41 圖三十五. EDMP衍生物其對β-glucocerebrosidase (N370S)之助疊效應42 圖三十六. DMDP衍生物其對β-glucocerebrosidase (N370S)之助疊效應42 圖三十七. 細胞檢驗68,69,72,73其對溶小體酵素α-glucosidase之選擇性43 表目錄 表一. 不同族群基因變異點位置6 流程目錄 流程一. 五環cyclic nitrone合成路徑0 流程二. 亞胺醣DAB與其衍生物NN-DAB之合成路徑.21 流程三. 亞胺醣DMDP與其衍生物NN-DMDP合成路徑22 流程四. 亞胺醣DNJ合成路徑23 流程五. 亞胺醣 68與69之合成路徑24 流程六. 亞胺醣 70與71之合成路徑25 流程七. 亞胺醣 72與73之合成路徑26 流程八. 亞胺醣DNJ-R合成路徑27 流程九. 分子群DNJ疏水性基團之合成28

    1. Shaner, N. C.; Patterson, G. H.; Davidson, M. W., Advances in fluorescent protein technology. J. Cell Sci. 2007, 120, 4247-4260.

    2. Conn, P. M.; Ulloa-Aguirre, A.; Ito, J.; Janovick, J. A., G protein-coupled receptor trafficking in health and disease: Lessons learned to prepare for therapeutic mutant rescue in vivo. Pharmacol. Rev. 2007, 59, 225-250.

    3. Sawkar, A. R.; Haeze, W.D.; Kelly, J. W., Therapeutic strategies to ameliorate lysosomal storage disorders-a focus on Gaucher disease. Cell. Mol. Life Sci. 2006, 63,1179-1192

    4. Schulze, H.; Kolter, T.; Sandhoff, K., Principles of lysosomal membrane degradation cellular topology and biochemistry of lysosomal lipid degradation. Biochim. Biophys. Acta. 2009, 1793, 674-683.

    5. Sun, Y., Saposin C is required for normal resistance of acid-β-glucosidase to proteolytic degradation. J. Biol. Chem. 2003, 278, 31918-31923.

    6. (a) Xu, Y. H.; Barnes, S.; Sun, Y.; Grabowski, G. A., Multi-system disorders of glycosphingolipid and ganglioside metabolism. J. Lipid Res. 2010, 51, 1643-1675. (b) Vaccaro, A. M.; Motta, M.; Tatti, M.; Scarpa, S.; Masuelli, L.; Bhat, M.; Vanier, M. T.; Tylki-Szymanska, A.; Salvioli, R., Saposin C mutations in Gaucher disease patients resulting in lysosomal lipid accumulation, saposin C deficiency, but normal prosaposin processing and sorting. Hum. Mol. Gen. 2010, 19, 2987-2997.

    7. Kolter, T.; Sandhoff, K., Lysosomal degradation of membrane lipids. FEBS. Lett. 2010, 584, 1700-1712.

    8. Parenti, G., Treating lysosomal storage diseases with pharmacological chaperones: from concept to clinics. EMBO Mol. Med. 2009, 1, 268-279.

    9. Gaucher disease synonyms: Glucocerebrosidase deficiency, glucosylceramidase deficiency includes: Gaucher disease type 1; Gaucher disease Type 2 (Acute); Gaucher disease Type 3 (subacute/chronic); Gaucher disease, Perinatal-lethal form; Gaucher disease, Cardiovascular Form

    10. 蔡艷秋,江睿玲,鄭奕帝;高雪氏症與其新療法; Chang. Gung. M. J. 2006, 13,1-2

    11. Kozarich, J. W., New LSD therapies unfolding. Chem. Biol. 2007, 14, 976-977.

    12. Loo, T. W.; Clarke, D. M., Chemical and pharmacological chaperones as new therapeutic agents. Expet. Rev. Mol. Med. 2007, 9, 1-18

    13. Fan, J. Q., Ishii, S., Asano, N. and Suzuki, Y., Accelerated transport and maturation of lysosomal alpha-galactosidase A in Farbry lymphoblasts by an enzyme inhibitor. Nat. Med. 1999, 5, 112-115

    14. Asano, N.; Ishii, S., Kizu, H.; Ikeda, K.; Yasuda, K.; Kato, A., Martin; O. R.; Fan, J. Q., In vitro inhibition and intracellular enhancement of lysosomal-α-galactosidase A activity in Fabry lymphoblasts by 1-deoxygalactonojirimycin and its derivatives. Eur. J. Biochem. 2000, 267, 4179-4186.

    15. (a) Fan, J. Q., Minireview Series: Introduction: Pharmacological chaperone therapy for lysosomal storage disorders-leveraging aspects of the folding pathway to maximize activity of misfolded mutant proteins. FEBS. J. 2007, 274, 4943-4943. (b) Fan, J. Q.; Ishii, S., Minireview: Active-site-specific chaperone therapy for Fabry disease. FEBS. J. 2007, 274, 4962-4971. (c) Zhu, X.; Sheth, K. A.; Li, S.; Chang, H. H.; Fan, J. Q., Rational design and synthesis of highly potent β-glucocerebrosidase inhibitors. Angew. Chem- Int. Edit. 2005, 44, 7450-7453.

    16. (a) Sawkar, A. R.; Cheng, W. C.; Beutler, E.; Wong, C. H.; Balch, W. E.; Kelly, J. W., Chemical chaperones increase the cellular activity of N370S beta-glucosidase: A therapeutic strategy for Gaucher disease. Proc. Natl. Acad. Sci. 2002, 99, 15428-15433. (b) Sawkar, A. R.; Adamski-Werner, S. L.; Cheng, W. C.; Wong, C. H.; Beutler, E.; Zimmer, K. P.; Kelly, J. W., Gaucher disease-associated glucocerebrosidases show mutation-dependent chemical chaperoning profiles. Chem. Biol. 2005, 12, 1235-1244.

    17. (a) Brumshtein, B.; Greenblatt, H. M.; Butters, T. D.; Shaaltiel, Y.; Aviezer, D.; Silman, I.; Futerman, A. H.; Sussman, J. L., Crystal structures of complexes of N-butyl-and N-nonyl-deoxynojirimycin bound to acid beta-glucosidase: insight into the mechanism of chemical chaperone action in Gaucher disease. J. Biol. Chem. 2007, 282, 29052-29058. (b) Caines, M. E. C.; Vaughan, M. D.; Tarling, C. A.; Hancock, S. M.; Warren, R. A. J.; Withers, S. G.; Strynadka, N. C. J., Structural and Mechanistic Analyses of endo-Glycoceramidase II, a Membrane-associated Family 5 Glycosidase in the Apo and GM3 Ganglioside-bound Forms. J. Biol. Chem. 2007, 282, 14300-14308. (c) Dvir, H.; Harel, M.; McCarthy, A. A.; Toker, L.; Silman, I.; Futerman, A. H.; Sussman, J. L., X-ray structure of human acid-β-glucosidase, the defective enzyme in Gaucher disease. EMBO. Rep. 2003, 4, 704-709. (d) Lieberman, R. L.; Wustman, B. A.; Huertas, P.; Powe, A. C.; Pine, C. W.; Khanna, R.; Schlossmacher, M. G.; Ringe, D.; Petsko, G. A., Structure of acid β-glucosidase with pharmacological chaperone provides insight into Gaucher disease. Nat. Chem. Biol. 2006, 3, 101-107. (e) Premkumar, L., X-ray structure of human acid-β-glucosidase covalently bound to conduritol-β-epoxide: Impliaction for Gaucher disease. J. Biol. Chem. 2005, 280, 23815-23819. (f) Wei, R. R.; Hughes, H.; Boucher, S.; Bird, J. J.; Guziewicz, N.; Van Patten, S. M.; Qiu, H.; Pan, C. Q.; Edmunds, T., X-ray and biochemical analysis of N370S mutant human acid-β-Glucosidase. J. Biol. Chem. 2010, 286, 299-308.

    18. Yu, Z. Q.; Sawkar, A. R.; Whalen, L. J.; Wong, C. H.; Kelly, J. W., Isofagomine- and 2,5-anhydro-2,5-imino-D-glucitol-based glucocerebrosidase pharmacological chaperones for Gaucher disease intervention. J. Med. Chem. 2007, 50, 94-100.

    19. Meritxell, E. G.; Canals, D.; Casas, J.; Llebaria, A. Delgado, A. Aminocyclitols as Pharmacological chaperones for glucocerebrosidase, a defective enzyme in Gaucher disease. ChemMedChem. 2007, 2, 992-994.

    20. Zheng, W.; Padia, J.; Urban, D. J.; Jadhav, A.; Goker-Alpan, O.; Simeonov, A.; Goldin, E.; Auld, D.; LaMarca, M. E.; Inglese, J.; Austin, C. P.; Sidransky, E., Three classes of gluclocerebrosidase inhibitors identified by quantitative high-throughput screening are chaperone leads for Gaucher disease. Proc. Natl. Acad. Sci. 2007, 104, 13192-13197.

    21. Hruska, K. S.; LaMarca, M. E.; Scott, C. R.; Sidransky, E., Gaucher disease: mutation and polymorphism spectrum in the glucocerebrosidase gene (GBA). Hum. Mutat. 2008, 29, 567-583.

    22. Rasmussen, T. S.; Allman, S.; Twigg, G.; Butters, T. D.; Jensen, H. H., Synthesis of N-alkylated noeurostegines and evaluation of their potential as treatment for Gaucher’s disease. Bioorg. Med. Chem. Lett. 2011, 21, 1519-1522.

    23. Schitter, G.; Steiner, A. J.; Pototschnig, G.; Scheucher, E.; Thonhofer, M.; Tarling, C. A.; Withers, S. G.; Fantur, K.; Paschke, E.; Mahuran, D. J.; Rigat, B. A.; Tropak, M. B.; Illaszewicz, C.; Saf, R.; Stütz, A. E.; Wrodnigg, T. M., Fluorous Iminoalditols: A new family of glycosidase inhibitors and pharmacological chaperones. ChemBioChem. 2010, 11, 2026-2033.

    24. Trapero, A.; Alfonso, I.; Butters, T. D.; Llebaria, A., Polyhydroxylated bicyclic isoureas and guanidines are potent glucocerebrosidase inhibitors and nanomolar enzyme activity enhancers in Gaucher cells. J. Am. Chem. Soc. 2011, 133, 5474-5484.

    25. Witte, M. D.; Kallemeijn, W. W.; Aten, J.; Li, K. Y.; Strijland, A.; Donker-Koopman, W. E.; van den Nieuwendijk, A. M. C. H.; Bleijlevens, B.; Kramer, G.; Florea, B. I.; Hooibrink, B.; Hollak, C. E. M.; Ottenhoff, R.; Boot, R. G.; van der Marel, G. A.; Overkleeft, H. S.; Aerts, J. M. F. G., Ultrasensitive in situ visualization of active glucocerebrosidase molecules. Nat. Chem. Biol. 2010, 6, 907-913.

    26. Sánchez-Ollé, G.; Duque, J.; Egido-Gabás, M.; Casas, J.; Lluch, M.; Chabás, A.; Grinberg, D.; Vilageliu, L., Promising results of the chaperone effect caused by iminosugars and aminocyclitol derivatives on mutant glucocerebrosidases causing Gaucher disease. Blood. Cell Mol. Dis. 2009, 42, 159-166.

    27. Wang, G. N.; Reinkensmeier, G.; Zhang, S. W.; Zhou, J.; Zhang, L. R.; Zhang, L. H.; Butters, T. D.; Ye, X. S., Rational design and synthesis of highly potent pharmacological chaperones for treatment of N370S mutant Gaucher disease. J. Med. Chem. 2009, 52, 3146-3149.

    28. (a) Díaz, L. a.; Bujons, J.; Casas, J.; Llebaria, A.; Delgado, A., Click chemistry approach to new N-substituted aminocyclitols as potential pharmacological chaperones for Gaucher Disease. J. Med. Chem. 2010, 53, 5248-5255. (b) Díaz, L. a.; Casas, J.; Bujons, J.; Llebaria, A.; Delgado, A., New glucocerebrosidase inhibitors by exploration of chemical diversity of N-substituted aminocyclitols using click chemistry and in situ screening. J. Med. Chem. 2011, 54, 2069-2079.

    29. Rempel, B.P.; Withers, S. G., Covalent inhibitors of glycosidases and their applications in biochemistry and biology. Glycobiology 2008, 8, 570-586.

    30. Butters, T. D., Gaucher disease. Curr. Opin. Chem. Biol. 2007, 11, 412-418.

    31. Yu, L.; Ikeda, K.; Kato, A.; Adachi, I.; Godin, G.; Compain, P.; Martin, O.; Asano, N., α-1-C-Octyl-1-deoxynojirimycin as a pharmacological chaperone for Gaucher disease. Bioorg. Med. Chem. Lett. 2006, 14, 7736-7744.

    32. Tsou, E. L.; Yeh, Y. T.; Liang, P. H.; Cheng, W. C., A convenient approach toward the synthesis of enantiopure isomers of DMDP and ADMDP. Tetrahedron 2009, 65, 93-100.

    33. Uriel, C. Y.; Santoyo-González, F., A short and efficient synthesis of 1,5-dideoxy-1,5-imino-D-galactitol (1-deoxy- D-galactostatin) and 1,5-dideoxy,1,5-imino-L-altritol (1-deoxy- L-Altrostatin) from D -Galactose. Synlett 1999, 593-595

    34. Liu, J. J.; Numa, M. M. D.; Liu, H. T.; Huang, S. J.; Sears, P.; Shikhman, A. R.; Wong, C. H., Synthesis and high-throughput screening of N-acetyl-beta-hexosaminidase inhibitor libraries targeting osteoarthritis. J. Org. Chem. 2004, 69, 6273-6283.

    35. Yang, J. M.; Chen, Y. F.; Tu, Y. Y.; Yen, K. R.; Yang, Y. L., Combinatorial computational approaches to identify tetracycline derivatives as flavivirus inhibitors. PLoS ONE 2007, 5, e428

    36. Brumshtein, B.; Salinas, P.; Peterson, B.; Chan, V.; Silman, I.; Sussman, J. L.; Savickas, P. J.; Robinson, G. S.; Futerman, A. H., Characterization of gene-activated human acid-β-glucosidase: Crystal structure, glycan composition, and internalization into macrophages. Glycobiology 2009, 20, 24-32.

    37. Brumshtein, B.; Wormald, M. R.; Silman, I.; Futerman, A. H.; Sussman, J. L., Structural comparison of differently glycosylated forms of acid-β-glucosidase, the defective enzyme in Gaucher disease. Acta Crystallogr., Sect D: Biol. Crystallogr. 2006, 62, 1458-1465.

    38. Alattia, J. R.; Shaw, J. E.; Yip, C. M.; Prive, G. G., Molecular imaging of membrane interfaces reveals mode of beta-glucosidase activation by saposin C. Proc. Natl. Acad. Sci. 2007, 104, 17394-17399.

    39. Atrian, S.; Lo’pez-Vin˜as, E.; Go’mez-Puertas, P.; Chaba’s, A.; Vilageliu, L.; Grinberg, D., An evolutionary and structure-based docking model for glucocerebrosidase-saposin C and glucocerebrosidase-substrate interactions-relevance for Gaucher disease. Proteins 2008, 70, 882–891

    40. Hawkins, C. A.; Alba, E. d.; Tjandra, N., Solution structure of human saposin C in a detergent environment. J. Mol. Biol. 2005, 346, 1381-1392.

    41. Tatti, M.; Salvioli, R.; Scarpa, S.; Moavero, Sabrina M.; Ciaffoni, F.; Felicetti, F.; Kaneski, Christine R.; Brady, Roscoe O.; Vaccaro, Anna M., The N370S (Asn370→Ser) mutation affects the capacity of glucosylceramidase to interact with anionic phospholipid-containing membranes and saposin C. Biochem J. 2005, 390, 95

    42. Rossmann, M.; Schultz-Heienbrok, R.; Behlke, J.; Remmel, N.; Alings, C.; Sandhoff, K.; Saenger, W.; Maier, T., Crystal structures of human saposins C and D: Implications for lipid recognition and membrane interactions. Structure 2008, 16, 809-817.

    43. Ahn, V. E.; Leyko, P.; Alattia, J. R.; Chen, L.; Privé, G. G., Crystal structures of saposins A and C. Protein Science 2006, 15, 1849-1857.

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