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研究生: 劉育如
Liu, Yu-Ju
論文名稱: 功能基因體分析耐熱青花菜在高溫下花球發育起始機制
Functional genomics approaches to understanding floral head formation under high temperature in heat-tolerant broccoli
指導教授: 黃浩仁
Huang, Hao-Jen
學位類別: 碩士
Master
系所名稱: 生物科學與科技學院 - 生命科學系
Department of Life Sciences
論文出版年: 2011
畢業學年度: 99
語文別: 英文
論文頁數: 58
中文關鍵詞: 耐熱青花菜花球發育功能基因體分析
外文關鍵詞: heat-tolerant broccoli, floral head
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  • 氣候變遷所造成的影響是現在人類所需面臨的重要議題。高溫在農業上會造成許多植物如: 豆、青花菜、棉和番茄等花器發育不全。以青花菜(Brassica oleracea L. var. italica)為例,其維生素、礦物質和抗癌物質磺胺胡蘿蔔素(sofulraphane)、硫配醣體(glucosinolate)等含量豐富,使青花菜成為營養價值相當高的蔬菜作物。然而溫帶作物青花菜喜好的生長環境平均溫度低於25°C,且花球形成需經過低溫春化處理,所以台灣在夏天時常無法自產青花菜。因此本研究利用耐熱與不耐熱品系之青花菜,探討兩者在高溫下花球形成之模式與開花基因相關轉錄因子表現活性。將青花菜分別利用高溫(27°C)和低溫(15°C)處理,以比較花球發育情形和開花相關基因的表現量發現: 耐熱青花菜不管在高溫或低溫處理下皆形成花球,不耐熱青花菜只在有低溫處理才能形成花球;而調控開花的相關基因BoFLC1與BoFT的表現量也與花球形成時間成高度相關。同時分析比較兩不同品系青花菜的FLC1基因啟動子(promoter)序列,結果顯示兩品系的啟動子在不同位置中分別存在14- 22個核苷酸缺失(deletion)現象,這很可能是造成兩品系於高溫逆境時基因表現量出現差異的原因。最後更進一步以寡核酸微陣列(Oligonucleotide microarray)分析兩品系青花菜在高溫逆境下的基因表現量,結果發現不耐熱品系的青花菜在22°C時即誘發熱休克蛋白(Heat shock proteins)基因的表現,而耐熱品系則需到更高溫時(27°C)才被誘導表現,這表示不耐熱品系對高溫的敏銳程度高於耐熱品系。本研究對青花菜在高溫逆境下開花相關基因進行探討,揭開植物在面對高溫逆境時的開花機制,並利用變異的啟動子序列篩選出具有高溫開花耐受性的植株,期許在未來能解決全球暖化衝擊下對農業作物所帶來的危機。

    Broccoli (Brassica oleracea L. var. italica), which contains high concentration of vitamins, minerals and anti-cancer substance (such as sofulraphae and glucosinolate), is a high nutritional value vegetable crop. However, like all other temperate crops, flowering only occurs when plants get vernalized. Most broccoli strains can not produce the curd in summer, however some strains can. In this study, two pure lines of broccoli were used to monitor the different curd- forming capacity. The heat- tolerant broccoli plant lines (Cheng-Long Early; CNE) exhibit better curd-forming capacity at relatively high temperature (27°C). In contrast, the heat- sensitive broccoli plants (regular broccoli lines) are unable to produce curd at 27°C. The expression of BoFLC1, a well- known negative regulator of flowering, was investigated and served as a molecular marker to distinguish between these two plant lines. In addition, we isolated FLC homologs from broccoli and investigated their transcript levels in heat- tolerant and heat- sensitive broccoli lines. To further investigate the differential expression of BoFLC1 in early and late lines at higher temperature, the promoter sequences corresponding to the two plant lines were cloned and sequenced. Subsequently, microarray experiment was performed to track the transcriptomic changes, including transcription factors, kinases and signalling components. Furthermore, the differential expression of Heat shock proteins (Hsps) in response to relatively high temperature were compared between these two broccoli lines. The differential HSP expression may reflect their sensitivity to high temperature. The global genomic expression shed light on the molecular mechanisms underlying the curd formation in broccoli. These differential gene expression and their sequences variants may be used by breeders as molecular markers and provide an opportunity to uncover different regulatory mechanisms on flowering in higher temperature in Brassica species.

    Chinese abstract 2 Abstract 3 Acknowlegements 4 Contents 5 List of Table 7 List of Figures 8 List of Supplementary Tables 10 List of Supplementary Figures 11 Abbreviations 12 1. Introduction 13 1.1 Environmental cues and hormones regulate flowering time control 13 1.2 The requirement of vernalization for flowering 14 1.3 The effects of vernalization on Flowering Locus C (FLC) expression 14 1.4 The floral pathway integrator: Flowing Locus T (FT) 15 1.5 The importance of flowering time control in agriculture 16 1.6 Aims of this study 17 2. Materials and Methods 19 2.1 Plant materials 19 2.2 Growth conditions 19 2.3 DNA extraction 20 2.4 RNA extraction 20 2.5 Reverse transcription-polymerase chain reaction (RT-PCR) 20 2.6 Polymerase chain reaction (PCR) 21 2.7 Cloning of PCR products 22 2.8 Microarray analysis 22 3 Results 24 3.1 Heat-tolerant lines exhibit curd formation capacity but not heat-sensitive lines at higher temperature (27°C) 24 3.2 The expression of flowering time-related genes at different temperature 24 3.3 The effect of vernalization on BoFLCs and BoFT genes expression in two broccoli lines 25 3.4 The expression of flowering time control genes at different developmental stages at 22°C 26 3.5 Comparison of BoFLC1 promoter sequences between heat-tolerant and heat-sensitive broccoli 27 3.6 Genome-wide gene expression profiles in heat-tolerant and heat-sensitive broccoli at different temperature 27 4 Discussion 29 5 References 32

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