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研究生: 黃志印
Huang, Chih-Yin
論文名稱: 肌凝蛋白V多重路徑運動分析
The kinetic analysis of multiple paths for Myosin V
指導教授: 黃明哲
Huang, Ming-Jer
學位類別: 碩士
Master
系所名稱: 工學院 - 工程科學系
Department of Engineering Science
論文出版年: 2004
畢業學年度: 92
語文別: 中文
論文頁數: 63
中文關鍵詞: 肌動蛋白肌凝蛋白V馬達蛋白三磷酸腺苷分子馬達
外文關鍵詞: Molecular Motor, Myosin V, Actin, Motor Protein, ATP
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  •   肌凝蛋白V(Myosin V)為一雙頭馬達蛋白(motor protein),其沿著肌動蛋白絲(actin filaments)朝正端運動。肌凝蛋白V和其它分子馬達相同,均利用ATP水解及水解產物的釋放而產生機械運動。文中提出一新的多重路徑運動模型,此模型乃基於考慮肌凝蛋白V的兩個馬達區域水解循環各自獨立。

      在模型中,我們以七個狀態間的轉換來描述肌凝蛋白V 的運動,其中一轉換速率受外力所影響。依此模型,我們可以瞭解肌凝蛋白V依照不同的化學反應路徑完成步進的動作。

      本文採用酵素動力學計算肌凝蛋白V 的運動速度,並利用隨機過程分析推算其隨機性(randomness)。分析結果顯示,在不同的ATP濃度及外力負載條件下,肌凝蛋白V 會有不同的運動速度、平均運動距離,以及隨機性。由本文理論所推算之值與文獻實驗數據比較,結果相符合。

      Myosin V is a two-head motor protein that move along actinfilaments toward barbed end. Like the other molecular motors, Myosin V use ATP hydrolysis and product release to produce movement. Here we
    propose a new multiple paths model that relies on the independent ATPase activities at the two heads.
     
    In this model, the processivity of Myosin V was described by the transition of seven states with one load-dependent rate. According to this model, we can understand how Myosin V step forward by different chemical reaction paths.

      In this paper, we use the enzyme kinetics and stochastic processes analysis for computing the mean velocity and randomness. The analysis reveal the variation of mean velocity, run length and of
    the randomness with ATP concentration under external load. These theoretical results are in agreement with the experimental ones.

    摘要⋯⋯Ⅰ 英文摘要⋯⋯Ⅱ 誌謝⋯⋯Ⅲ 目錄⋯⋯Ⅳ 表目錄⋯⋯Ⅶ 圖目錄⋯⋯Ⅶ 符號說明⋯⋯Ⅸ 第一章 緒論⋯⋯1 1-1 前言⋯⋯1 1-2 研究動機與目的⋯⋯2 1-3 文獻回顧⋯⋯3 1-4 本文結構⋯⋯4 第二章 肌凝蛋白V及運動機制簡介⋯⋯5 2-1 步進分子馬達簡介⋯⋯⋯5 2-1-1 運動素與動力蛋白⋯⋯5 2-1-2 肌凝蛋白⋯⋯6 2-2 肌凝蛋白V與肌動蛋白絲結構形狀⋯⋯7 2-2-1 肌凝蛋白V結構⋯⋯7 2-2-2 肌動蛋白絲結構⋯⋯8 2-3 肌凝蛋白V運動機制⋯⋯9 2-3-1 肌凝蛋白V步步輪替前進模型⋯⋯9 2-3-2 馬達頭部與肌動蛋白及ATP作用方式⋯⋯11 2-3-3 ATP水解循環及機械化學耦合運動⋯⋯13 第三章 肌凝蛋白V多重路徑運動模型及數學理論分析⋯15 3-1 多重路徑運動模型⋯⋯15 3-1-1 肌凝蛋白V跨進模型⋯⋯15 3-1-2 多重路徑運動模型建立⋯⋯18 3-2 數學理論分析⋯⋯25 3-2-1 運動速度及平均步進距離⋯⋯25 3-2-2 隨機性(randomness)⋯⋯30 第四章 結果與討論⋯⋯33 4-1 ATP濃度對運動之影響⋯⋯33 4-2 外力負載對運動之影響⋯⋯35 4-3 綜合討論⋯⋯36 第五章 結論與未來研究方向⋯⋯40 5-1 結論⋯⋯40 5-2 未來研究方向⋯⋯41 參考文獻⋯⋯43 自述⋯⋯63

    1. Mehta, A. D., Rock, R. S., Rief, M., Spudich, J.
    A., Mooseker, M. S., and Cheney, R. E. (1999).
    Myosin-V is a processive actin-based motor.
    Nature 400, 590-593.

    2. De La Cruz, E. M., Wells, A. L., Rosenfeld, S.
    R., Ostap, E. M., and Sweeney, H. L. (1999). The
    kinetic mechanism of myosin V. Proc. Natl. Acad.
    Sci. USA 96, 13726-13731.

    3. Walker, M. L., Burgess, S. A., Sellers, J. R.,
    Wang, F., Hammer , J. Ⅲ A., Trinick, J., and
    Knight, P. J. (2000). Two-headed binding of a
    processive myosin to F-actin. Nature 405,
    804-807.

    4. Burgess, S., Walker, M., Wang, F., Sellers, J.
    R., White, H. D., Knight, P. J., and Trinick, J.
    (2002). The prepower stroke conformation of
    myosin V. J. Cell Biol. 159, 983-991.

    5. Forkey, J. N., Quinlan, M. E., Shaw, M. A.,
    Corrie, J. E., and Goldman, Y. E. (2003).
    Three-dimensional structural dynamics of myosin
    V by single-molecule fluorescence polarization.
    Nature 422, 399-404.

    6. Yildiz, A., Forkey, J. N., McKinney, S. A., Ha,
    T., Goldman, Y. E., and Selvin, P. R. (2003).
    Myosin V walks hand-over-hand: single
    fluorophore imaging with 1.5-nm localization.
    Science 300, 2061-2065.

    7. Coureux, P. D., Wells, A. L., Menetrey, J.,
    Yengo, C. M., Morris, C. A., Sweeney, H. L., and
    Houdusse, A. (2003). A structural state of the
    myosin V motor without bound nucleotide. Nature
    425, 419-423.

    8. Fuller, G. M. and Shields, D. (2001). Molecular
    basis of medical cell biology. McGraw-Kill, New
    York.

    9. Schliwa, M. (2003). Molecular Motors. Wiley,
    Weinheim.

    10. Mermall, V., Post, P. L., and Mooseker, M. S.
    (1998). Unconventional Myosins in cell
    movement, membrane traffic, and signal
    transduction. Science 279, 527-533.

    11. Reck-Peterson, S. L., Provance, D. W. Jr.,
    Mooseker, M. S., and Mercer, J. A. (2000).
    Class V myosins. Biochim. Biophys., Acta.
    1496, 36-51.

    12. Mehta, A. (2001). Myosin learns to walk. J.
    Cell Science 114, 1981-1998.

    13. Veigel, C., Wang, F., Bartoo, M. L., Sellers,
    J. R., and Molloy, J. E. (2002). The gated gait
    of the processive molecular motor, myosin V.
    Nature Cell Biol. 4, 59-65.

    14. Rayment, I., Rypniewski, W. R., Schmidt-Base,
    K., Smith, R., Tomchick, D. R., Benning, M.M.,
    Winkelmann, D.A., Wesenberg, G., and Holden,
    H.M. (1993). Three-dimensional structure of
    myosin subfragment-1: a molecular motor.
    Science 261, 50-58.

    15. Holmes, K. C., Angert, I., Kull, F. J., Jahn,
    W., and Schroder, R. R. (2003). Electron
    cryo-microscopy shows how strong binding of
    myosin to actin releases nucleotide. Nature
    425, 423-427.

    16. Rief, M., Roc, R. S., Mehta, A. D., Mooseker,
    M. S., Cheney, R. E., and Spudich, J. A.
    (2000). Myosin-V stepping kinetics: a molecular
    model for processivity. Proc. Natl. Acad. Sci.
    USA 97, 9482-9486.

    17. Baker, J. E., Brosseau, C., Fagnant, P., and
    Warshaw, D. M. (2003). The unique properties of
    tonic smooth muscle emerge from intrinsic
    as well as intermolecular behaviors of Myosin
    molecules. J. Biol. Chem. 278, 28533-28539.

    18. Yengo, C. M. and Sweeney, H. L. (2004).
    Functional role of loop 2 in myosin V.
    Biochemistry. Biochemistry 43, 2605-2612.

    19. Trybus, K. M., Krementsova, E., and Freyzon, Y.
    (1999). Kinetic characterization of a monomeric
    unconventional myosin V construct. J. Biol.
    Chem. 274, 27448-27456.

    20. Wang, M. D., Schnitzer, M. J., Yin, H.,
    Landick, R., Gelles, J., and Block, S. M.
    (1998). Force and velocity measured for single
    molecules of RNA polymerase. Science 282,
    902-907.

    21. Elston, T. (2000). A macroscopic description of
    biomolecular transport. J. Math.Biol.41,189-
    206.

    22. Gilbert, H. F. (2000). Basic concepts in
    biochemistry. McGraw-Hill, New York.

    23. Keller, D. and Bustamante, C. (2000). The
    mechanochemistry of molecular motors. Biophys.
    J. 78, 541-556.

    24. Fisher, M. E. and Kolomeisky, A. B. (2001).
    Simple mechanochemistry describes the dynamics
    of kinesin molecules. Proc. Natl. Acad. Sci.
    USA, 98, 7748-7753.

    25. Svoboda, K., Mitra, P. P., and Block, S. M.
    (1994). Fluctuation analysis of Motor Protein
    Movement and Single Enzyme Kinetics. Proc.
    Natl. Acad. Sci. USA, 91, 11782-11786.

    26. Kolomeisky, A.B.and Fisher, M. E. (2003). A
    simple kinetic model describes the processivity
    of Myosin-V. Biophys. J. 84, 1642-1650.

    27. Sakamoto, T., Amitani, I., Yokota, and E.,Ando,
    T. (2000). Direct observation of processive
    movement by individual Myosin V molecules.
    Biochim. Biophys. Res. Commun. 272, 589-292.

    28. Baker, J. E., Krementsova, E. B., Kennedy, G.
    G., Armstrong, A., Trybus, K. M., and Warshae,
    D. M . (2004). Myosin V processivity: Multiple
    kinetic pathways for head-to-head coordination.
    Proc. Natl. Acad. Sci. 101, 5542-5546.

    29. Visscher, K., Schnitzer, M. J., and Block, S.
    M. (1999). Single kinesin molecules studied
    with a molecular force clamp. Nature 400,
    184-189.

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