| 研究生: |
歐明昌 Ou, Ming-Chang |
|---|---|
| 論文名稱: |
石斑魚神經壞死病毒B2基因功能分析及檢測方法開發 Function analysis and diagnostic method for Grouper NNV B2 gene |
| 指導教授: |
陳宗嶽
Chen, Tzong-Yueh |
| 學位類別: |
碩士 Master |
| 系所名稱: |
生物科學與科技學院 - 生物科技研究所 Institute of Biotechnology |
| 論文出版年: | 2006 |
| 畢業學年度: | 94 |
| 語文別: | 中文 |
| 論文頁數: | 69 |
| 中文關鍵詞: | 石斑魚 、B2蛋白 、神經壞死病毒 |
| 外文關鍵詞: | Grouper, B2 protein, Nervous necrosis virus (NNV) |
| 相關次數: | 點閱:143 下載:3 |
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病毒性神經壞死症(Viral nervous necrosis disease,VNN disease)為近年來臺灣石斑魚養殖上極為嚴重的疾病,其致病原為神經壞死病毒(Nervous Necrosis Virus,NNV),此病毒感染會造成石斑魚苗及幼魚大量死亡,死亡率往往高達90%~100%,造成臺灣石斑養殖業極大的損失。
神經壞死病毒屬於野田病毒科(Nodaviridae)中的betanodavirus屬,此科還有另一屬為alphanodavirus,主要感染植物和昆蟲。以往對神經壞死病毒其蛋白質的研究多偏向於鞘蛋白,但從alphanodavirus的研究可知在病毒感染的過程中,subgenomic RNA3所轉譯出的非結構蛋白質B2對病毒複製扮有重要功能,其與對抗寄主的防禦系統以利病毒複製有關。在此研究中,探索了解石斑魚神經壞死病毒的B2的特性,發現其在細胞內的表現位置為細胞質和細胞核皆存在;而在B2功能分析方面,則發現其具有與雙股RNA結合的能力,並可抑制寄主細胞內的RNAi機制,而更進一步利用點突變的B2蛋白作分析,發現B2蛋白質中第53個位置的arginine與其結合雙股RNA的能力有重要關係。
另外,本實驗室與成大工科所合作開發神經壞死病毒微流體檢測晶片,期望能利用為流體晶片的優點來改善檢驗方法。此研究中使用直接溶解RT-PCR以節省時間和人力;而用RNA1的3端做為檢測標的可更有效早期偵測到病毒的感染,搭配上微流體晶片的高靈敏度,將能達到使檢測方法更快速有效的訴求。
In recent years, viral nervous necrosis disease (VNN)is the most acute disease of hatchery-reared grouper in Taiwan . The causative agent of VNN was nervous necrosis virus (NNV)and the mortality of grouper larvae and juvenile during disease outbreak were usually above 90%.
NNV belongs to the beta subgroup of the virus family nodavirade. Nodavirade has another subgroup alpha-nodavirus which infect inscets and plants. From the study of alpha-nodavirus, it is known that the non-structural B2 protein plays an important role in viral replication and B2 can inhibit the RNA interference system of the host cell. However, the function of beta-nodavirus B2 protein is not clear. In the study, I found that the localization of B2 is in the cytoplasm and nucleus,and B2 can binds to dsRNA and inhibits RNAi of the host cell. Advanced study by dsRNA binding assay of B2 with point mutation, I also found that the fifty-third arginine of B2 protein is involved in the dsRNA binding activity.
Additionally, for effective prevention of nervous nercrosis disease, establishing a fast and accurate diagnosis method is very important work. Microfluidic chip has been characterized by convenient and quick operation. Therefore, our laboratory try to develop a diagnosis method on microfluidic chip. In this study, we use direct-lysis RT-PCR and take RNA1 3’ as detected target for the goal of fast and effective diagnosis.
莊蕙菁(2005)神經壞死病毒特性及檢測方法之研究,國立成功大學生物科技研究所碩士論文,台南。
Andreas Lingel, Bernd Simon, Elisa Izaurralde, and Michael Sattler. The structure of the flock house virus B2 protein, a viral suppressor of RNA interference, shows a novel mode of double-stranded RNA recognition. European Molecular Biology Organization 6:1149-1155(2005)
Antonio Alcami and Ulrich H. Koszinowski. Viral mechanisms of immune evasion. Trends in Microbiology 8:410-418(2000)
Beau J. Fenner, Rekha Thiagarajan, Hui Kheng Chua, and Jimmy Kwang. Betanodavirus B2 is an RNA interference antagonist that facilitates intracellular viral RNA accumulation. Journal of virology 80:85-94(2006)
Chao, Jeffrey A.; Lee, June Hyung; Chapados, Brian R.; Debler, Erik W.; Schneemann, Anette; Williamson, James R.Dual modes of RNA-silencing suppression by Flock House virus protein B2. Nature Structural & Molecular Biology 12:952-957(2005)
Chi, S.C.;Lo, C.F.;Chang, P.S.;Peng, S.E.;Kou, G.H. and Chen, S.N. Mass mortality associated with viral nervous necrosis (VNN) in two species of hatchery-reared grouper, Epinephelus fuscogutatus and Epinephelus akaara (Temminck & Schlegel). Journal of Fish Disease 20:185-193 (1997)
Chi, S.C., Hu, W.W., and Lo, B.J. Establishment and characteristic of a continuous cell line (GF-1) derived from grouper, Epinephelus coioides (Hamilton): a cell line susceptible to grouper nervous necrosis virus(GNNV).Journal of Fish Disease 22:173-182 (1999)
Chi, S.C., Shieh, J.R. and Lin, S.J. Genetic and antigenic analysis of betanodaviruses isolated from aquatic organisms in Taiwan.Disease of Aquatic Organism 55:221-228 (2003)
Chiem, N.C.; Colyer, C. and Harrison, D. J. Microfludic systems for clinical diagnostics. The International Conference on Solid-State Sensors and Actuators 1:183-186 (1997)
Christopher S. Sullivan and Don Ganem. A virus-encoded inhibitor that blocks RNA interference in mammalian cells. Journal of virology 79:7371-7379(2005)
Etienne Bucher, Hans Hemmes, Peter de Haan, Rob Goldbach and Marcel Prins. The influenza A virus NS1 protein binds small interfering RNAs and suppresses RNA silencing in plants. Journal of General Virology 85:983–991(2004)
Holger Ludwig, Yasemin Suezer, Zoe Waibler, Ulrich Kalinke, Barbara S. Schnierle1 and Gerd Sutter. Double-stranded RNA-binding protein E3 controls translation of viral intermediate RNA, marking an essential step in the life cycle of modified vaccinia virus Ankara. Journal of General Virology 87:1145–1155(2006)
Hongwei Li, Wan Xiang Li, Shou Wei Ding. Induction and Suppression of RNA Silencing by an Animal Virus. Science 296:1319-1321(2004)
Huang B., Tan C., Chang S.F., Munday B., Mathew J., Ngoh G.H., and Kwang J. Detection of nodavirus infection in experimentally infected and commercial barramundi(Lates calcarifer Bloch)using recombinant coat protein-based ELISA and RT-PCR. J Fish Dis 24:135-142(2001)
Hwai-Wen Chang, Julia C. Watson, and Bertram L. Jacobs. The E3L gene of vaccinia virus encodes an inhibitor of the interferon-induced, double-stranded RNA-dependent protein kinase. Proc. Natl. Acad. Sci. USA 89:4825-4829(1992)
Ingunn Sommerset, Audun Nerland. (2004) Complete sequence of RNA1
and subgenomic RNA3 of Atlantic halibut nodavirus (AHNV) Disease
of Aquatic Organism 58:117-125.
Johnson, K.L.; Price, B.D.; Eckerle, L.D. and Ball, L.A. Nodamura virus nonstructural protein B2 can enhance viral RNA accumulation in both mammalian and insect cells. Journal of Virology 78:6698–6704. (2004)
Kren V. Kibler, Teri Shors, Kim B. Perkins, Cameron C. Zeman, Matthew P. Banaszak, Jennifer Biesterfeldt, Jefferey O. Langland, and Bertram L. Jacobas. Double-Stranded RNA Is a Trigger for Apoptosis in Vaccinia Virus-Infected Cells. Journal of Virology 71:19925-2003(1996)
Kyle L. Johnson, Duane B. Price and Andrew L. Ball. Recovery of infectivity from cDNA clones of nodamura virus and identification of small nonstructural proteins. Virology 305:436-451. (2003)
Lance D. Eckerle, Andrew L. Ball. Replication of the RNA segments of a bipartite viral genome is coordinated by a transactivating subgenomic RNA. Virology 296:165-176(2002)
Lee Wai-Ming and Paul Ahlquist. Membrane Synthesis, Specific Lipid Requirements, and Localized Lipid Composition Changes Associated with a Positive-Strand RNA Virus RNA Replication Protein. Journal of virology 77:12819-12828(2003)
Li, H.;Li,W. X.;and Ding, S. W. Induction and suppression of RNA silencing by an animal virus. Science 296:1319–1321. (2002)
Linda M. Pilarski , Jana Lauzon , Erin Strachan , Sophia Adamia , Alexey Atrazhev , Andrew R. Belch , Christopher J. Backhouse. Sensitive detection using microfluidics technology of single cell PCR products from high and low abundance IgH VDJ templates in multiple myeloma.Journal of Immunological Methods, 305:94–105 (2005)
Lu R.; Maduro, M.; Li, F.; Li, H.W.; Broitman, Maduro G.; Li, W.X.; Ding S.W. Animal virus replication and RNAi-mediated antiviral silencing in Caenorhabditis elegans. Nature 436:1040–1043(2005)
Mattick, John S. and Gagen, Michael J. The evolution of controlled multitasked gene networks: The role of introns and other noncoding RNAs in the development of complex organisms. Molecular Biology and Evolution 18:1611-1630(2001)
Min,Ji-Young and Krug, Robert M. The primary function of RNA binding by the influenza A virus NS1 protein in infected cells: Inhibiting the 2-5 oligo (A) synthetase_RNase L pathway. Proc. Natl. Acad. Sci. USA 103:7100-7105(2006)
Munday, B.L.; Langdon, J.S.; Hyatt, A. and Humphrey, J.D. Mass mortality associated with a viral-induced vacuolating encephalopathy and retinopathy of larval and juvenile barramundi. Aquaculture 103, 197-211. (1992)
Munday, B. L.; Kwang, J.; Moody, N. Betanodavirus infections of teleost fish: a review. Journal of Fish Disease 25:127-142. (2002)
Neema Agrawal, Asif Mohmmed, Pawan Malhotra, Raj K. Bhatnagar, and Sunil K. Mukherjee. RNA Interference: Biology, Mechanism, and Applications. Microbiology and Molecular Biology Reviews 67:657-685(2003)
Nishimura, T.; Mori, K.; Furuhashi, M.; Nakai, T.; Furusawa, I. and Muroga, K. "Polymerase chain reaction (PCR) amplification of RNA of striped jack nervous ncerosis virus (SJNNV)" Disease of Aquatic Organism 18:103-107(1994)
Nishizawa, T.; Mori, K.; Furuhashi, M.; Nakai, T.; Furusawa, I. and Muroga, K. Comparison of the coat protein genes of five fish nodaviruses,the causative agents ofviral nervous necrosis in marine fish. Journal of General Virology 76:1563-1569(1995)
Nishizawa, T.; Furuhashi, M.; Nagai, T.; Nakai, T. and Muroga, K. Genomic classification of fish nodaviruses by molecular phylogenetic analysis of the coat proteingene. Applied Environment Microbiology 63:1633-1636 (1997)
Stefan Rothenburg, Nikolaus Deigendesch, Katharina Dittmar, Friedrich Koch-Nolte, Friedrich Haag, Ky Lowenhaupt, and Alexander Rich. A PKR-like eukaryotic initiation factor 2 kinase from zebrafish contains Z-DNA binding domains instead of dsRNA binding domains. PNAS 102: 1602-1607(2005)
Sullivan, C.S., Ganem, D. (2005) A virus-encoded inhibitor that blocks RNA interference in mammalian cells. Journal of Virology 79:7371–7379(2005)
Tokinori Iwamoto, Kazuyuki Mise, Atsushi Takeda, Yasushi Okinaka, Koh-Ichiro Mori, Misao Arimoto, Tetsuro Okuno, and Toshihiro Nakai. Characterization of Striped jack nervous necrosis virus subgenomic RNA3 and biological activities of its encoded protein B2. Journal of General Virology 86:2807 - 2816(2004)
Wang, W.; Riedel, K.; Lynch, P.; Chien, C.Y. and Krug, R.M. RNA binding by the novel helical domain of the influenza virus NS1 protein requires its dimer structure and a small number of specific basic amino acids. RNA 5:195-205(1999)
Yoshikoshi, K. and Inoue, K. Viral nervous necrosis in hatchery -reared larvae and juvenile of Japanese parrotfish,Oplegnatbus fasciatus. Journal of Fish Disease 13:69-77(1990)