| 研究生: |
蔡子星 Chua, Chee Shin |
|---|---|
| 論文名稱: |
點帶石斑魚自噬標記LC3基因選殖及分析 Molecular characterization of autophagy marker LC3 in orange-spotted grouper (Epinephelus coioides) |
| 指導教授: |
陳宗嶽
Cheng, Tzong-Yueh |
| 學位類別: |
碩士 Master |
| 系所名稱: |
生物科學與科技學院 - 生命科學系 Department of Life Sciences |
| 論文出版年: | 2013 |
| 畢業學年度: | 101 |
| 語文別: | 英文 |
| 論文頁數: | 88 |
| 中文關鍵詞: | LC3 、自噬 、點帶石斑魚 、自噬小體 、神經壞死病毒 |
| 外文關鍵詞: | LC3, autophagy, Epinephelus coioides, orange-spotted grouper, autophagosome, nervous necrosis virus |
| 相關次數: | 點閱:121 下載:2 |
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細胞自噬是細胞內一種重要的機制,主要透過形成自噬小體和自噬溶酶體,降解細胞質中非必需蛋白質,減少外來物質與壓力之干擾,進而促進細胞正常之生長與發展。LC3蛋白對於自噬小體形成過程中扮演關鍵角色,並被廣泛視為是否產生細胞自噬之重要標記。點帶石斑魚過去相關研究,並無選殖及開發該物種之LC3作為生物標記。本研究嘗試選殖點帶石斑魚的LC3基因並針對該基因特性進行探討。該基因全長1440 bp可轉譯 126氨基酸長之蛋白。此外,LC3基因可在各組織表現。為了解 LC3 於石斑魚生長期表現情形,研究中觀察其石斑魚卵孵化後不同時間點之基因表現,結果顯示基因能在不同批的魚苗有相同的趨勢。經Hank’s solution培養及rapamycin處理GF-1細胞下,証實點帶石斑LC3會轉換成LC3-II形成自噬小體和自噬溶酶體。再者,無論是細胞亦或是動物實驗,顯示經病毒感染後皆可誘發點帶石斑LC3之表現,進一步經研究証實點帶石斑LC3及Hsp90AB彼此間具有交互作用,未來可深入研究LC3蛋白與 Hsp90AB於病毒感染機制上所扮演之角色為何。
Autophagy is a conserve and important cellular mechanism to sustain cell survival during stress, promote healthy growth and development by degrade and recycle unwanted cytosolic proteins and organelles in autophagosome and autolysosome. LC3, involved in autophagosome formation is widely used as marker. However, currently there is no orange-spotted grouper (Epinephelus coioides) LC3 cloned. In this study, a grouper’s LC3 (osgLC3) mRNA had been cloned. Its size is 1440 bp DNA sequence and can be translated to 126 amino acid long proteins. Besides, expression level of osgLC3 found constitutively expressed in all tissues. For the investigation of osgLC3 expression level during grouper’s larvae development, sample from different days of post-hatchery were examined found similar pattern of expression from 3 different batches. Moreover, treatments of Hank’s solution and rapamycin on GF 1 cell line, the osgLC3 was able to form osgLC3-II and synthesizes autophagosome and autolysosome. Furthermore, it has found that autophagy was induced during virus infection, not only in vitro, but also in vivo experiments. Interesting discovery of protein-protein interaction between osgLC3 and Hsp90AB allows future study on their roles and mechanisms during NNV infection in orange-spotted grouper.
Arstila AU, Trump BF (1968) Studies on cellular autophagocytosis. The formation of autophagic vacuoles in the liver after glucagon administration. The American Journal of Pathology. 53:687-733.
Axe EL, Walker SA, Manifava M, Chandra P, Roderick HL, Habermann A, Griffiths G, Ktistakis NT (2008) Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum. Journal of Cell Biology. 182: 685-701.
Barth S, Glick D, Macleod KF (2010) Autophagy: assay and artifacts. Journal of Pathology. 221:117-124.
Blommaart EF, Krause U, Schellens JP, Vreeling-Sindelárová H, Meijer AJ (1997) The phosphatidylinositol 3-kinase inhibitors wortmannin and LY294002 inhibit autophagy in isolated rat hepatocytes. European Journal of Biochemistry. 243:240-246.
Cecconi F, Levine B (2008) The role of autophagy in mammalian development: cell makeover rather than cell death. Developmental Cell. 15:344-357.
Chee CC, Hwang JK, Yang JM (2006) (PS)2: protein structure prediction server. Nucleic Acids Research. doi: 10.1093/nar/gkl187.
Chen YM, Kuo CE, Wang TY, Shie PS, Wang WC, Huang SL, Tsai TJ, Chen PP, Chen JC, Chen TY (2010) Cloning of an orange-spotted grouper Epinephelus coioides heat shock protein 90AB (HSP90AB) and characterization of its expression in response to Nodavirus. Fish and Shellfish Immunology. 28:895-904.
Chi SC, Hu WW, Lo BJ (1999) Establishment and characterization of a continuous cell line (GF-1) derived from grouper, Epinephelus coioides (Hamilton): a cell line susceptible to grouper nervous necrosis virus (GNNV). Journal of Fish Diseases. 22:173-182.
Cuervo AM, Dice JF (2000) Regulation of lamp2a levels in the lysosomal membrane. Traffic. 1:570-583.
Duby R, Scherer PE, Levine B (2012) Exercise-induced BCL2-regulated autophagy is required for muscle glucose homeostasis. Nature. 481:511-515.
Dunn WA Jr (1994) Autophagy and related mechanisms of lysosome-mediated protein degradation. Trends in Cell Biology. 4:139-43.
Espert L, Codogno P, Biard-Piechaczyk M (2007) Involvement of autophagy in viral infections: antiviral function and subversion by viruses. Journal of Molecular Medicine. 85:811-23.
Hayashi-Nishino M, Fujita N, Noda T, Yamaguchi A, Yoshimori T, Yamamoto A (2009) A subdomain of the endoplasmic reticulum forms a cradle for autophagosome formation. Nature Cell Biology. 11:1433-1437.
He C, Bartholomew CR, Zhou WB, Klionsky DJ (2009) Assaying autophagic activity in transgenic GFP-LC3 and GFP-Gabarap zebrafish embroys. Autophagy. 5: 520-526.
He C, Bassik MC, Moresi V, Sun K, Wei Y, Zou Z, An Z, Loh J, Fisher J, Sun Q, Korsmeyer S, Packer M, May HI, Hill JA, Virgin HW, Gilpin C, Xiao G, Bassel-Duby R, Scherer PE, Levine B (2012) Exercise-induced BCL2-regulated autophagy is required for muscle glucose homeostasis. Nature. 481:511-515.
He C, Klionsky DJ (2009) Regulation mechanisms and signaling pathways of autophagy. Annual Review of Genetics. 43:67-93.
Huang J, Klionsky DJ (2007) Autophagy and human disease. Cell Cyle. 6:1837-1849.
Kabeya Y, Mizushima N, Ueno T, Yamamoto A, Kirisako T, Noda T, Kominami E, Ohsumi Y, Yoshimori T (2003) LC3, a mammalian homologues of yeast Apg8p is localized in autophagosome membrane after processing. Journal of EMBO. 19:5720-5728.
Kabeya Y, Mizushima N, Yamamoto A, Oshitani-Okamoto S, Ohsumi Y, Yoshimori T (2004) LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation. Journal of Cell Science. 117:2805-2812.
Kamada Y, Funakoshi T, Shintani T, Nagano K, Ohsumi M, Ohsumi Y (2000) Tor-mediated induction of autophagy via an Apg1 protein kinase complex. Journal of Cell Biology. 150:1507-13.
Kaushik S, Bandyopadhyay U, Sridhar S, Kiffin R, Martinez-Vicente M, Kon M, Orenstein SJ, Wong E, Cuervo AM (2011) Chaperone-mediated autophagy at a glance. Journal of Cell Science. 124:495-499.
Kawai A, Uchiyama H, Takano S, Nakamura N, Ohkuma S (2007) Autophagosome-lysosome fusion depends on the pH in acidic compartments in CHO cells. Autophagy. 3:154-157.
Klionsky DJ, Emr SD (2000) Autophagy as a regulated pathway of cellular degradation. Science. 290:1717-1721.
Kozak M (1984) Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs. Nucleic Acids Research. 12: 857–872.
Kuma A, Matsui M, Mizushima N (2007) LC3, an autophagosome marker, can be incorporated into protein aggregates independent of autophagy: caution in the interpretation of LC3 localization. Autophagy. 3:323-328.
Kundu M, Thompson CB (2005) Macroautophagy versus mitochondrial autophagy: a question of fate?. Cell Death and Differentiation. 2:1484-1489.
Kuo HC, Wang TY, Chen PP, Chen YM, Chuang HC, Chen TY (2011) Real-time quantitative PCR assay for monitoring of nervous necrosis virus infection in grouper aquaculture. Journal of Clinical Microbiology. 49:1090-1096.
Lee YR, Lei HY, Liu MT, Wang JR, Chen SH, Jiang-Shieh YF, Lin YS, Yeh TM, Liu CC, Liu HS (2008) Autophagic machinery activated by dengue virus enhances virus replication. Virology. 374:240-248.
Legakis JE, Klionsky DJ (2006) Overview of Autophagy: Autophagy in Immunity and Infection. Wiley-VCH. doi: 10.1002/352760880 X.ch1.
Lerena MC, Colombo MI (2011) Mycobacterium marinum induces a marked LC3 recruitment to its containing phagosome that depends on a functional ESX-1 secretion system. Cell Microbiology. 13:814-835.
Liu CR (2012) The study of the effect of temperature on nervous necrosis virus infection in grouper larvae and juveniles. Master Thesis. Retrieved from Chia-Nan University of Pharmacy and Science.
Maier HJ, Britton P (2012) Involvement of autophagy in Coronavirus replication. Viruses. 4:3440-3451.
Mann SS, Hammarback JA (1994) Molecular characterization of light chain 3. A microtubule binding subunit of MAP1A and MAP1B. The Journal of Biological Chemistry. 269:11492-11497.
Mari M, Tooze SA, Reggiori F (2011) The puzzling origin of the autophagosomal membrane. F1000 Biology Reports. doi: 10.3410/B3-25.
Mizushima N, Levine B, Cuervo AM, Klionsky DJ (2008) Autophagy fights disease through cellular self-digestion. Nature. 451:1069-1075.
Mizushima N, Yoshimori T (2007) How to interpret LC3 immunoblotting. Autophagy. 3:542-525.
Mizushima N, Yoshimori T, Levine B (2010) Methods in Mammalian Autophagy Research. Cell. 140:313-326.
Mukaiyama H, Kajiwara S, Hosomi A, Giga-Hama Y, Tanaka N, Nakamura T, Takegawa K (2009) Autophagy-deficient Schizosaccharomyces pombe mutants undergo partial sporulation during nitrogen starvation. Microbiology. 155:3816 3826.
Ni HM, Bockus A, Wozniak AL, Jones K, Weinman S, Yin XM, Ding WX (2011) Dissecting the dynamic turnover of GFP-LC3 in the autolysosome. Autophagy. 7:188-20
Noda T, Ohsumi Y (1998) Tor, a phosphatidylinositol kinase homologue, controls autophagy in yeast. Journal of Biological Chemistry. 273:3963-3966.
Orvedahl A, Levine B (2009) Eating the enemy within: autophagy in infectious diseases. Cell Death and Differentiation. 16:57-69.
Rosenfeldt MT, Ryan KM (2011) The multiple roles of autophagy in cancer. Carcinogenesis. 32:955-963.
Rubinsztein DC, Cuervo AM, Ravikumar B, Sarkar S, Korolchuk V, Kaushik S, Klionsky DJ (2009) In search of an “autophagomometer”. Autophagy. 5:585 589.
Ryoo HD, Baehrecke EH (2010) Distinct death mechanisms in Drosophila development. Current Opinion in Cell Biology. 22:889-895.
Sarkar S, Ravikumar B, Rubinsztein DC (2009) Autophagic clearance of aggregate-prone proteins associated with neurodegeneration. Methods in Enzymology. 453:83-110.
Scherz-Shouval R, Shvets E, Fass E, Shorer H, Gil L, Elazar Z (2007) Reactive oxygen species are essential for autophagy and specifically regulate the activity of Atg4. Journal of EMBO. 26:1749-1760.
Sir D, Chen WL, Choi J, Wakita T, Yen TS, Ou JH (2008) Induction of incomplete autophagic response by Hepatitis C virus via the unfolded protein response. Heatology. 48:1054-1061.
Tanemura M, Ohmura Y, Deguchi T, Machida T, Tsukamoto R, Wada H, Kobayashi S, Marubashi S, Eguchi H, Ito T, Nagano H, Mori M, Doki Y (2012) Rapamycin causes upregulation of autophagy and impairs islets function both in vitro and in vivo. American Journal of Transplantation. 12:102-114.
Tanida I, Sou YS, Ezaki J, Minematsu-Ikeguchi N, Ueno T, Kominami E (2004) HsAtg4B/HsApg4B/autophagin-1 cleaves the carboxyl termini of three human Atg8 homologues and delipidates microtubule-associated protein light chain 3 and GABAA receptor-associated protein-phospholipid conjugates. Journal of Biological Chemistry. 279:36268-26276.
Tanida I, Ueno T, Kominami E (2004) LC3 conjugation system in mammalian autophagy. The International Journal of Biochemistry and Cell Biology. 36:2503-2518.
Tanida I, Ueno Y, Kominami E (2008) LC3 and Autophagy: Autophagosome and Phagosome. Methods in Molecular Biology. 445:77-88.
Tanida I, Waguri S (2010) Measurement of autophagy in cells and tissues. Methods in Molecular Biology. 648:193-214.
Terman A, Brunk UT (2005) Autophagy in cardiac myocyte homeostasis, aging, and pathology. Cardiovascular Research. 68:355-365.
Truong K, Ikura M (2001) The use of FRET imaging microscopy to detect protein-protein interactions and protein conformational changes in vivo. Current Opinion in Structural Biology. 11:573-578.
Tsukamoto S, Kuma A, Murakami M, Kishi C, Yamamoto A, Mizushima N (2008) Autophagy is essential for preimplantation development of mouse embryos. Science. 321:117-120.
Wang RX (2009) Interaction between betanodavirus and autophagy. Master Thesis. Retrieved from National Taiwan University.
Wileman T (2006) Aggresomes and autophagy generate sites for virus replication. Science. 312:875-878.
Wu YT, Tan HL, Shui G, Bauvy C, Huang Q, Wenk MR, Ong CN, Codogno P, Shen HM (2010) Dual role of 3-methyladenine in modulation of autophagy via different temporal patterns of inhibition on class I and III phosphoinositide 3-kinase. Journal of Biological Chemistry. 285:10850-10861.
Xu C, Liu J, Hsu LC, Luo Y, Xiang R, Chuang TH (2011) Functional interaction of heat shock protein 90 and Beclin 1 modulates Toll-like receptor-mediated autophagy. FASEB Journal. 25:2700-2710.
Ylä-Anttila P, Vihinen H, Jokitalo E, Eskelinen EL (2009) Monitoring autophagy by electron microscopy in Mammalian cells. Methods in Enzymology. 452:143-164.
校內:2015-09-13公開