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研究生: 陳琮明
Chen, Tsung-Ming
論文名稱: 第九纖維母細胞生長因子基因表現受三端未轉譯區調控之研究
Regulation of human fibroblast growth factor 9 (FGF9) expression through FGF9 3’untranslated region
指導教授: 孫孝芳
Sun, Hsiao-Fang
學位類別: 博士
Doctor
系所名稱: 醫學院 - 基礎醫學研究所
Institute of Basic Medical Sciences
論文出版年: 2010
畢業學年度: 98
語文別: 英文
論文頁數: 98
中文關鍵詞: 第九纖維母細胞生長因子三端未轉譯區後轉錄層次調控
外文關鍵詞: fgf9, AUF1, mRNA stability
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  • 第九纖維母細胞生長因子(FGF9)為一種自體分泌及旁分泌的生長因子,並且在胚胎、器官、性別發育與正常生理機制的維持上扮演重要的角色。進一步說,FGF9的基因表現量對生命至關重要。FGF9之異常表現被發現與許多疾病有關連性,暗示著FGF9在不同的表現量、組織、及時間需要被精密的控制。因此,瞭解細胞如何調控FGF9的表現對探討其在病理上所扮演之角色是一項重要的議題。這份報告主要著重在研究FGF9三端未轉譯區(3’UTR)是否參與在其基因調控的機制中。藉由在二十一位性別倒置的病人與七十二位正常人對FGF9基因做系統性搜索,發現一個位在FGF9 3’UTR的微衛星,TG雙核酸重複序列,與人類性腺發育缺失有相關性存在。深入探討更證實此TG重複序列可以在前、後轉錄層次調控基因表現量。此外,我們也在FGF9 3’UTR發現一個具有演化保留性的序列,AU-rich element (ARE),並證實藉由AU-rich element binding protein 1 (AUF1)的結合而對FGF9核醣核酸(mRNA)的穩定性產生重大影響。最後,我們證實透過AUF1參與的mRNA快速降解可以控制FGF9表現量的恆定。而本報告證實了3’UTR對FGF9表現的重大影響力,進而對FGF9相關生理反應扮演極重要的角色。

    Fibroblast growth factor 9 (FGF9) is an autocrine/paracrine growth factor that plays critical roles in embryonic and organic development, sexual determination and diverse physiologic events. FGF9 mRNA is ubiquitously expressed in embryonic stage but is restricted to adult brain and kidney. Aberrant expression of FGF9 is associated with several pathological conditions, suggesting that the level, tissues, and stages of FGF9 expression need to be precisely controlled. This report is fuscous on investigating whether the 3’ untranslated region (3’UTR) of the human FGF9 is involved in FGF9 gene regulation. Systematical screening of FGF9 gene in 21 XY females and 72 XX females and XY males shows that a polymorphic microsatellite (MS) motif, the TG dinucleotide repeat, is located at FGF9 3’UTR and associated with human gonadal dysgenesis. Further experiments demonstrated that the (TG)n motif modulated gene expression at both pre- and post-transcriptional levels. In addition, we also identified an evolutionary conserved AU-rich element (ARE) in FGF9 3’UTR and demonstrated it is crucial for FGF9 mRNA stability through the interaction with AU-rich element binding protein 1 (AUF1). Finally, we showed that AUF1 medicated FGF9 rapid degradation controls the homeostasis of FGF9 expression, which in turns to play a critical role in the FGF9-medicated biological processes.

    TABLE OF CONTENTS Abstract in Chinese………………………………………………………………...………..I Abstract in English……………………………..…………………………………..………II Acknowlegement……………………………………………………………….…...……..III Table of Contents……………………………………………………………...……..……..V List of Tables……………………………………………………………..…………...…VIII List of Figures..………………………………………………………………………...….IX CHAPTER ONE……………………………….…………..………...………………...……1 Literature Review……………………………………………………………………...……1 1.1 Fibroblast growth factors (FGFs) ……………………………...…………...……2 1.2 FGF receptors (FGFRs) …………………………...………….…………...…..…2 1.3 FGF signaling pathway……………………………………………………..……3 1.4 Fibroblast growth factor 9 (FGF9) …………………………….…………...……3 1.4.1 The functions of FGF9………………………………..…..…………...……4 1.4.2 The pathogenic role of FGF9…………………….……….…………...……6 1.4.2.1 Endometriosis…………………………………………..………...……6 1.4.2.2 Cancers…………………………………………………………...……6 1.4.2.3 Multiple synostoses syndrome (SYNS3) ………………………..……7 1.5 Gene regulation of FGF9…………………………………………………...……8 1.6 Posttranscriptional control………………………………………...………...……8 1.6.1 3’ untranslational region (3’UTR) ……………………..……………...……9 1.6.2 mRNA stability……………………………………………....…..…...……11 1.6.3 Mechanisms of mRNA decay………………………………………...……12 1.6.4 Cis-elements involved in mRNA decay ………………………………..…12 1.6.5 RNA binding proteins involved in mRNA decay……………..……...……14 1.7 Hypothesis and research objective………………………………………...……17 CHAPTER TWO…………………………………………………………………….....….18 Microsatellite in the 3’ untranslated region of human fibroblast growth factor 9 (FGF9) gene exhibits pleiotropic effect on modulating FGF9 protein expression……………..….18 2.1 Abstract……………………………………………………………………..…..19 2.2 Introduction………………………………………………………………...…...20 2.3 Materials and Methods…………………………………………....…….…..…..21 2.3.1 Sample collection and genomic DNA isolation……………………….…21 2.3.2 SRY gene mutation screening…………………………………….....…......22 2.3.3 Sequence-scanning the human FGF9 gene…..…………………...……….22 2.3.4 Cell culture………………………………………………………...………23 2.3.5 Reporter constructs………………………………………………...………24 2.3.6 Transient transfection and dual luciferase assay…………………...……...25 2.3.7 Computational analysis of FGF9 3’UTR sequences………………....……25 2.3.8 RNA turnover…………………………...…………………………...…….26 2.3.9 Real-time RT-PCR…………………………………………………...…….26 2.3.10 Statistical analysis…………………………….……………………..…….27 2.4 Results…………………………………………………………………….…….27 2.4.1 Recruitment of male-to-female sex reversal patients………………..…….27 2.4.2 Identification of sequence variants in the FGF9 gene………………..…...29 2.4.3 The FGF9 3’UTR microsatellite motif regulated gene expression………..31 2.4.4 The FGF9 3’UTR microsatellite motif regulated FGF9 promoter…...…...33 2.4.5 Different alleles of FGF9 3’UTR microsatellite had different effects on the regulation of FGF9 promoter activity………………….…………….……35 2.4.6 Different lengths of the 3’UTR microsatellite motif affected luciferase RNA stability differently……...............................................................................37 2.5 Discussion……………………………………………........................................42 CHAPTER THREE……………………………………...………………...………………46 p42AUF1 isoform specifically binds to the 3’ UTR of human FGF9 gene and controls FGF9 mRNA decay………………………………………………………………………………46 3.1 Abstract…………………………………………..………………..……………47 3.2 Introduction………………………………..……………………...…………….48 3.3 Materials and Methods…………………...……………………….…………….50 3.3.1 Cell culture…………………………………………………...……………50 3.3.2 Plasmids………………………………...……………………...…………..51 3.3.3 Transient transfection, and luciferase reporter assay....................................51 3.3.4 mRNA isolation and half-life measurement………………….……………52 3.3.5 UV crosslink and biotin pull down assay…………………….……………53 3.3.6 Western blot analysis………………………………………………….…...53 3.3.7 RNA interference…………………………………………………….…….54 3.3.8 Computational analysis of FGF9 3’UTR sequence..………………...…....54 3.3.9 Statistical analysis………………………………………....…………..…..55 3.4 Results…………………………………………………...………...……………55 3.4.1 The 3’UTR of FGF9 mRNA contains ARE…..…...…………………..…..55 3.4.2 FGF9 ARE decrease gene expression in HEK293 cells…………….…..56 3.4.3 AUF1 specifically binds to FGF9 ARE………………...……………….62 3.4.4 AUF1 knockdown increases FGF9 mRNA amount………………………66 3.4.5 AUF1 depletion sustains the PGE2-medicated induction of FGF9 mRNA……………………………………………………..………………66 3.4.6 p42AUF1 over-expression decreases FGF9 mRNA level….……………….67 3.5 Discussion……………………………………………………..………………..72 CHAPTER FOUR……………………………………………………………….………76 General Conclusions and Discussion.…………………………………………...………76 4.1 General Summary……………………………………………………..………77 4.2 The complexity of FGF9 gene regulation……………………...……………..77 4.2.1 Epigenetic control……………………………………..…………………78 4.2.2 Transcriptional control…………………………………………...……..78 4.2.3 Posttranscriptional control………………………………………..…….78 4.3 Further direction………………………………………………………..……..80 REFERRENCES……………………………………………………………………….83

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