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研究生: 林高進
Lin, Kao-Chin
論文名稱: 應用多任務學習於細菌揮發性有機化合物分類與嵌入式運算電子鼻系統之實作
Multi-Task Learning for Bacterial VOCs Classification and Deployment on an Embedded Computational Electronic Nose System
指導教授: 林哲偉
Lin, Che-Wei
學位類別: 碩士
Master
系所名稱: 工學院 - 生物醫學工程學系
Department of BioMedical Engineering
論文出版年: 2025
畢業學年度: 113
語文別: 英文
論文頁數: 66
中文關鍵詞: 可攜式電子鼻多任務學習深度學習揮發性有機化合物細菌分類模型量化
外文關鍵詞: Portable Electronic Nose, Multi-Task Learning, Deep Learning, Volatile Organic Compounds, Bacterial Identification, Model Quantization
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  • 細菌感染是全球醫療體系面臨的重大挑戰,而能否快速且準確地鑑別感染源,對臨床診斷與治療決策具有關鍵影響。針對此需求,本研究提出一套基於多任務學習(Multi-Task Learning, MTL)架構的電子鼻分類模型,用以分類細菌代謝產生之揮發性有機化合物(Volatile Organic Compounds, VOCs)相關的氣體訊號,藉此實現多面向的細菌辨識任務。該模型可同時執行三項分類任務:革蘭氏染色分類、菌種鑑別與濃度分級,有效提升推論效率與任務整合性。
    相較於過往文獻中常見的傳統機器學習方法,需仰賴人工特徵擷取並搭配分類演算法進行氣味辨識,本文採用深度學習模型可自動學習特徵,簡化處理流程,進一步提升模型使用效率與分類準確度。本模型以一維卷積神經網路為特徵萃取骨幹,並融合通道加權與特徵加權等注意力機制,以加強對關鍵氣味特徵的辨識能力。資料前處理方面,採用基線移除與 最大最小正規化處理,有效減少背景干擾並提升模型穩定性。實驗部分選用五種常見致病菌株(Escherichia coli、Klebsiella pneumoniae、Pseudomonas aeruginosa、Streptococcus agalactiae 與 Staphylococcus aureus),並在六種濃度(102、103、104、105、106、107 CFU/mL)條件下蒐集 VOC 訊號資料。透過 10-fold 交叉驗證進行模型訓練與評估,並與其他文獻中的氣體分類模型進行比較,於三項任務中分別達成 98.83%、98.92% 與 85.83% 的平均準確率,展現本模型在多元任務中的優異表現與潛力。
    為進一步驗證系統的實用性與可部署性,本研究將訓練完成的模型經由後訓練量化轉換為 8-bit 精度,並部署至低功耗嵌入式平台 ESP32-S3。結合緊湊型 MEM感測器模組,實現模型在裝置端的即時推論功能,無須仰賴高階運算平台即可完成樣本預測。根據實測結果,量化模型仍能維持高分類準確率,並於 ESP32-S3 上達到平均單次推論時間約 1798 毫秒,證實其於資源受限場域中的可行性。
    此外,本研究亦針對本系統與先前開發之 QCM 電子鼻系統進行比較,評估兩者在體積、功耗、硬體成本與推論平台效能上的差異,結果顯示 MEMS 系統在可攜性與應用彈性方面具明顯優勢。綜合而言,本研究成功建構一套具備多任務辨識能力、可部署於嵌入式裝置的電子鼻系統,未來有望應用於臨床感染初篩、智慧醫療設備與行動健康監控等多元場域。

    Bacterial infections pose a major challenge to global healthcare systems, where the ability to rapidly and accurately identify the causative pathogen is critical for clinical diagnosis and treatment decisions. To address this need, this study proposes a multi-task learning (MTL)-based electronic nose (E-nose) classification model designed to analyze volatile organic compounds (VOCs) produced by bacterial metabolism. The model simultaneously performs three classification tasks—Gram stain categorization, bacterial species identification, and concentration level estimation—thereby enhancing inference efficiency and integrating multiple diagnostic objectives within a single framework.
    Unlike conventional machine learning approaches that rely on handcrafted feature extraction and separate classifiers, our method employs a deep learning model that automatically learns relevant features, simplifying the analysis process and improving both usability and accuracy. The core architecture is based on a one-dimensional convolutional neural network, augmented with channel and feature attention mechanisms to enhance the detection of critical odor characteristics. For data preprocessing, baseline correction and min-max normalization are applied to reduce background noise and improve model robustness.
    Experiments were conducted using VOC samples collected from five clinically relevant bacterial strains (Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, Streptococcus agalactiae, and Staphylococcus aureus), across six concentration levels (10² to 10⁷ CFU/mL). The model was evaluated using 10-fold cross-validation, achieving average accuracies of 98.83% (Gram stain), 98.92% (species), and 85.83% (concentration), demonstrating excellent multi-task performance.
    To further validate the system's practicality, the trained model was quantized to 8-bit precision via post-training quantization and deployed on a low-power embedded platform (ESP32-S3). Combined with a compact MEMS gas sensor module, real-time on-device inference was achieved without the need for high-performance computing hardware. Evaluation results show that the quantized model maintains high classification accuracy, with an average inference time of approximately 1798ms per sample on the ESP32-S3, confirming its feasibility for deployment in resource-constrained environments.
    Additionally, the proposed MEMS-based system was compared to a previously developed QCM-based E-nose system in terms of size, power consumption, hardware cost, and inference performance. Results indicate significant advantages in portability and deployment flexibility for the MEMS platform. In conclusion, this study successfully establishes a deployable, multi-task-capable E-nose system, with promising potential for use in clinical pre-screening, smart healthcare devices, and mobile health monitoring applications.

    摘要 I Abstract III 致謝 V Table of Contents VI List of Tables VIII List of Figures IX Chapter 1 Introduction 1 1.1 Background 1 1.1.1 Bacterial Infections 1 1.1.2 Bacterial Detection Methods 2 1.1.3 Electronic Nose System 4 1.2 Computational Approaches for E-Nose Classification 5 1.2.1 Machine Learning Algorithm 6 1.2.2 Deep Learning Algorithm 7 1.3 Embedded and Portable E-Nose System 8 1.3.1 Multi-Task Learning for Joint E-Nose Data 8 1.3.2 Lightweight Techniques for Model Deployment 10 1.3.3 From QCM to MEMS: Developing a Portable E-Nose 11 1.4 Research Objective 12 Chapter 2 Material and Method 13 2.1 Algorithm 13 2.1.1 Data Preprocessing 13 2.1.2 CNN-Based Multi-Tasks Learning Architecture 17 2.1.3 Cross Validation 20 2.2 Prototype of MEMS E-Nose System 22 2.2.1 System Description 23 2.2.2 Quantized Lightweight Model on ESP32-S3 28 Chapter 3 Result and Discussion 29 3.1 Experimental Setup 29 3.1.1 Hardware of QCM E-Nose System 29 3.1.2 Odor Collection Process for Bacteria in vitro 31 3.2 Experimental Result 32 3.2.1 Multi-Task Classification: Gram Stain, Species, and Concentration 34 3.2.2 Performance of Embedded Quantized Model 37 3.3 Discussion 37 3.3.1 Comparison of Different Algorithms 39 3.3.2 Comparison between QCM System and MEMS System 41 Chapter 4 Conclusion and Future Work 44 4.1 Conclusion of this Study 44 4.2 Future Work 45 4.2.1 Consideration of Antibiotic-Resistant Strains 45 4.2.2 Sensor Strategy and Hybrid E-Nose Integration 46 4.2.3 System Integration and Product Optimization 49 4.3 Limitation 49 Reference 51

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