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研究生: 賴泓霖
Lai, Hung-Lin
論文名稱: 口腔癌及癌前病灶組織與細胞株之粒線體D-loop區段序列及其基因體數量分析
Analysis of D-loop Sequence and Copy Number of Mitochondrial DNA in Oral Cancer and Precancer Tissues and Cell lines
指導教授: 謝達斌
Shieh, Dar-Bin
學位類別: 碩士
Master
系所名稱: 醫學院 - 口腔醫學研究所
Institute of Oral Medicine
論文出版年: 2004
畢業學年度: 92
語文別: 英文
論文頁數: 77
中文關鍵詞: 突變率氧化性傷害
外文關鍵詞: copy number, deletion, 8-OHdG oxidative damage, mitochondrial DNA
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  • 口腔癌位居台灣男性死亡率的第五位。之前的研究中,我們偵測到粒線體DNA中之4977 bps片段缺失會隨著口腔癌的致癌過程產生量的變化。D-loop區域在粒線體DNA (mtDNA)的複製與轉錄過程中扮演著重要的角色,並過去文獻曾報導在腫瘤組織中該區於有相當高的突變率。本研究中針對雷射顯微切割技術分離之正常口腔上皮、患者之口腔癌前與癌症組織,和16株不同口腔癌臨床分期的癌前與癌症細胞株,以及正常口腔角質細胞(hNOK)之mtDNA的D-loop區域進行突變分析。並利用即時定量PCR(QRT-PCR)方法進行mtDNA copy number的定量。結果顯示細胞株在D-loop區域的突變率明顯比檢體低。在細胞株中,突變發生的主要分佈位置介於 (np) 54~354 (heavy strand) 和 154~454 (light strand)之間;然而,臨床癌組織的突變則介於np134~504 (heavy strand)之間。在15株口腔癌細胞株中,有10株的mtDNA copy number和hNOK細胞比較起來呈現出下降的趨勢,而癌前細胞株(DOK)則是略微上升,其mtDNA copy number介於正常和癌細胞之間。在臨床檢體方面,癌症組織的mtDNA copy number和癌前與正常組織相比呈現出明顯的下降。同時我也發現在臨床檢體上,mtDNA copy number與mtDNA的突變率間是呈一負相關的關係。本研究的結果顯示,在口腔癌致癌過程中,mtDNA之D-loop區域突變的累積主要集中於mtTFA 的結合位置與heavy strand的複製原點。癌前病灶組織與癌症組織相較有較高的突變率與分佈較廣的突變位置。口腔癌細胞株則有較低的突變率。在癌症組織中,mtDNA D-loop區段的突變率與mtDNA copy number間是呈一負相關的關係。在口腔癌細胞株與臨床檢體中,4977bps deletion和mtDNA copy number之間也呈現負相關。癌細胞株之研究模型顯示8-OHdG mtDNA damage與mtDNA copy number間成一相反的關係。mtD-loop區域的突變率則時隨著8-OHdG DNA damage的比例增加而增加。綜而言之,本研究發現粒線體DNA之D-loop區段突變率在臨床檢體與細胞株中較之正常組皆有明顯升高且與其氧化性傷害程度有正相關並可能影響到粒線體基因複製效能,而粒線體基因組之4977bps大片段缺損亦與粒線體基因複製效能降低有關聯。然而,在整個致癌過程中,mtDNA D-loop區域突變對mtDNA複製效能影響的機制,及與癌症發生發展之間的關係仍需進一步的探討。

    Oral cancer is the fifth leading cause of cancer death in Taiwanese male population. In a previous study, a quantitative alteration of deleted mtDNA 4977bps deletion was detected in the progression of oral carcinogenesis. The displacement loop (D-loop) of mitochondria genome plays important role in mtDNA replication and transcription. A high mutation rate within the region has been reported in other tumors. In the present study, we analyzed mutations in the D-loop region of mtDNA using laser microdissected paired normal, cancer and precancer cells from patients and sixteen cell lines established from cancers of different clinical stages and precancer as well as primary cultured normal oral keratinocytes (hNOK). Quantitative real-time PCR (QRT-PCR) was performed to analyze mtDNA copy number reference to the nuclear DNA. The results indicate a significant lower mutation frequency of the D-loop region in the cell lines compared to the specimens. The hot regions for mutations was distributed between the nucleotide position (np) 54~354 (heavy strand) and 154~454 (light strand) in the cell lines, while microdissected cancer tissues harbored mutations between np134~504 (heavy strand). Ten of fifteen oral cancer cell lines had decreased mtDNA copy number compared with primary cultured hNOK, while the precancer line (DOK) exhibited slightly increased mtDNA copy number between normal and the cancer cell lines. In the clinical samples, significant decreased mtDNA copy number was also observed in cancers compared to normal and precancer tissues. A significant inverse association was found between mtDNA copy number and the D-loop mutation rate in the clinical samples (p<0.01). In conclusion, D-loop mutations were accumulated among mtTFA binding sites and the heavy strand replication origin during oral carcinogenesis. Precancer lesions had a higher mutation rate and broader range of mutation distribution than the cancer tissues did. Oral cancer cell lines presented significantly lower mutation rate compared with those of the clinical specimens. The D-loop mutation rate is inversely associated with mtDNA copy number in cancer tissues. In oral cancer cell lines and clinical specimens, there was a reverse relationship between the 4977bp deletion and copy number of mtDNA. The level of 8-OHdG DNA damage was inversely associated with mtDNA copy number in the cancer cell lines. The mutation frequency of mtDNA D-loop region was also associated with the level of 8-OHdG content in mtDNA. In summary, this study revealed an association between mtDNA D-loop region mutations and oral carcinogenesis progression. The mutation frequency was associated with the mtDNA 8-OHdG oxidative damage and may decrease the mtDNA replication efficiency. The large scale mtDNA deletion was also associated with the decrease in the mtDNA copy number. However, the mechanism for D-loop mutations in oral carcinogenesis progression and their functional effects on the mtDNA replication and cancer development remained to be elucidated.

    Contents Chinese abstract i English abstract iii Acknowledge v Contents vi Table Contents viii Figure Contents ix Introduction 1 Object 16 Materials & Methods: 1. Cell culture 18 2. The primary cultured of normal oral keratinocyte cell 19 3. The collection and preparation of clinical specimens 20 4. Laser Microdissection System (LMS) 20 5. DNA extraction 21 6. The polymerase chain reaction of D-loop region in mitochondrial DNA 22 7. The purification of PCR product and sequence analysis 23 8. The analysis of mtDNA copy number in oral cancer and precancer cell lines 24 9. The analysis of 4977bp deletion in oral cancer and precancer cell lines 25 10. The analysis of 8-OHdG lesions in oral cancer and precancer cell lines and clinical tissues 26 11. Statistic analysis 28 Results 1. The mutation frequency of mitochondrial DNA D-loop region in oral cancer clinical specimens and cell lines 29 2. Localization of mitochondrial DNA D-loop point mutations in the clinical specimens 29 3. The mutation frequency is association with the DNA copy number in both clinical specimens and cell lines 30 4. The mtDNA 4977bps deletion is associated with the mtDNA copy number in the clinical specimens and the cell lines 31 5. Analysis of 8-OhdG lesions in mtDNA D-loop region sequence alteration 31 Discussion 33 References 39 Figure & Table 53

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