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研究生: 蘇郁清
Su, Yu-Chin
論文名稱: 基因選殖神經壞死病毒非結構基因B2及其功能之探討
Cloning and characterization of NNV B2 function
指導教授: 洪健睿
Hong, Jiann-Ruey
學位類別: 碩士
Master
系所名稱: 生物科學與科技學院 - 生物科技研究所
Institute of Biotechnology
論文出版年: 2005
畢業學年度: 93
語文別: 中文
論文頁數: 103
中文關鍵詞: 凋亡基因非結構性蛋白B2神經壞死病毒粒線體小片段干擾性RNA
外文關鍵詞: apoptotic gene, mitochondrion, siRNA, non-structure protein B2, Nervous Necrosis Virus
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  •   細胞常藉由調控程式化凋亡來清除被病毒感染之宿主細胞。神經壞死病毒感染宿主細胞時,已知可引起細胞凋亡,但病毒如何促進或抑制宿主凋亡之機制尚不清楚。利用西方轉印免疫實驗中,首次發現在病毒感染後24 小時,B2 蛋白質(8.3 KD)開始持續表現。為探討此神經壞死病毒B2 蛋白所扮演之功能,我們從病毒次基因體RNA3 中,選殖出此非結構性蛋白基因B2。B2基因全長含有228 個核苷酸,可轉譯出75 個胺基酸。若將B2基因接到黃色螢光基因(EYFP)後面形成融合基因,並轉染至細胞內,表現B2 蛋白會進入粒線體內。如果將B2基因短暫的表現於石斑魚肝臟細胞株(GL-av)內,可誘發細胞凋亡。同時,當我們短暫表現B2 基因與抗斑馬魚凋亡基因Bcl-xL 及Mcl-1a 時,則可減緩B2所誘發之細胞凋亡現象。此外,當利用基因knockdownz 方式之小片段干擾性RNA(siRNA)可有效阻斷B2 蛋白之表現,則可減少細胞凋亡及減緩病毒複製。由本論文之研究,證實B2 蛋白是屬早期表現之粒線體蛋白。其功能則與誘發宿主細胞凋亡及病毒複製與蛋白表現有密切相關。希望此研究之發現,能對防治或預防神經壞死病毒所誘發之疾病有所助益。

      Apoptosis is a genetically-controlled preprogrammed event which eliminates cells during viral infection with host cells. Recently,betanodavirus-induced host cell death through apoptosis have been reported, but virus how to involved in regulate the host cell death is still a few understood. We found that B2 protein was expression occurred at 24 h post-infection (p.i.). So, we interest to know its function, then B2 gene be cloned and characterized was done. The betanodavirus TN1 strain B2 cDNA is 228 nucleotides long, encoding a polypeptide of 75 amino acids that protein size about 8.3 kDa in grouper liver (GL-av) cells. EYFP as a reporter gene was used for tracing B2 protein that also found localized in mitochondria in GL-av cell after 24 h p.i. When overexpression of B2 gene that significantly induces GL-av apoptotic cell death, but also prevents cell death by extra expression of Bcl-2 member Bcl-XL and Mcl-1a, which were cloned from zebrafish. Moreover, siRNA approaches are used for knockdowned B2 expression in transient and stable expression cell line in GL-av cell, which can enhances the cell viability up to 30% at 24 h p.i. and reduces the lose of mitochondria membrane potential during NNV infection up to 20% from 24 h to 72 h p.i., respectively. Taken results suggest that B2 is an early expression gene which may play an important role on either induces the host post-apoptotic necrosis or may regulate the viral replication. This finding may thus provide an important insight into the control or prevention of nodavirus-induced diseases.

    目錄 中文摘要 II 英文摘要 III 誌謝 IV 目錄 V 表圖目錄 VII 一、緒論 (一) 石斑魚之基本介紹 1 (二) 神經壞死病毒之基本特性 2 (三) 病毒引起宿主細胞凋亡之研究 5 (四) 核醣核酸干擾術 ( RNA interference ) 9 (五) 目的 12 二、材料與方法 A. 材料 13 B. 儀器 22 C. 方法 25 三、結果 (一) NNV 感染GL-av 細胞後病毒蛋白表現情形 45 (二) 病毒基因B2 基因選殖及質體構築 45 (三) B2 基因功能分析 47 (四) B2 基因誘發細胞凋亡之分子機制 51 (五) 利用siRNA 系統阻斷B2 基因表現 52 (六) 神經壞死病毒感染B2 si RNA 之穩定表現細胞株 55 四、討論與展望 (一) 魚類細胞株基因轉染效率低 57 (二) B2 蛋白位置及功能之相關性 58 (三) siRNA 設計之位置及使用 59 (四) 展望 61 五、參考文獻 62 六、附錄 69 七、自述 103

    Adams J. M., Cory S. The Bcl-2 protein family: arbiters of cell survival.
    Science 281(5381): 1322-1326. (1998).
    Schinzel A., Kaufmann T., Borner C. Bcl-2 family members: intracellular
    targeting, membrane-insertion, and changes in subcellular localization.
    Biochim. Biophys. Acta (Review) 1644: 95–105. (2004).
    Anne R., Richard C. M., Philip E. B. Viruses and apoptosis. Annu. Rev.
    Microbiol. 53: 577-628. (1999).
    Bae J., Leo C., Hsu S., Hsueh A. Mcl-1S, a splicing variant of the antiapoptotic Bcl-2 family member Mcl-1, encodes a proapoptotic protein possessing only the BH3-domain. J. Biol. Chem. 275(33): 25255-261. (2000).
    Brown D. G., Sun X. M., Cohen G. M. Dexamethasone-induced apoptosis
    involves cleavage of DNA to large fragments prior internucleosomal
    fragmentation. J. Biol. Chem. 268: 3037-3039. (1993).
    Boonyaratpalin S., Supamattaya K., Kasornchandra J., Hoffmann R. W.,
    Picona - like virus associated with mortality and a spongious encephalopathy
    in grouper Epinephelus malabaricus. Dis. Aqua.t Org. 26: 75-80. (1996)
    Delsert C., Morin N., Cpmps M. A fish encephalitis virus that differs from
    other nodaviruses by its capsid protein processing. Arch. Virol. 142: 2359-2371.(1997)
    Cerutti H. RNA interference: traveling in the cell and gaining functions?
    Trends Genet. 19(1) : 39-46. (2003)
    Albarino C., Lance D. Eckerle L., Ball C. The cis-acting replication signal at
    the 3` end of Flock House virus RNA2 is RNA3-dependent. Virology 311:
    181-191. (2003)
    Chao D. T., Korsmeyer S. J. BCL-2 family: regulators of cell death. Annu. Rev.
    Immunol. 16: 395-419. (1998).
    Tan C., Huang B., Chang S. F., Ngoh G. H., Munday B., Chen S. C., Kwang J.
    Determination of the complete nucleotide sequences of RNA1 and RNA2 from
    greasy grouper nervous necrosis virus, Singapore strain. J. Gen. Virol. 82:
    647-653. (2001)
    Daniela C., Li H., Kohn J. R. Functional siRNA expression from transfected
    PCR products. RNA 8: 1454-1460. (2002)
    Desagher S., Martinou J. C. Mitochondria as the central control point of
    apoptosis. Trends Cell. Biol. 10(9): 369-377. (2000).
    Eick D., Hermeking H. Viruses as pacemakers in the evolution of defence
    mechanisms against cancer. Trends Genet. 12: 4-6. (1996).
    Eleouet J. F. , Druesne N., Chilmonczyk S., Monge D., Dorson M., Delmas B.
    Comparative study of in-situ cell death induced by the viruses of viral
    haemorrhagic septicaemia (VHS) and infectious pancreatic necrosis (IPN) in
    rainbow trout. J. Comp. Pathol. 124(4): 300-7. (2001).
    Essbauer S., Ahne W. The epizootic haematopoietic necrosis virus (Iridoviridae)
    induces apoptosis in vitro. J.Vet.Med. B Infect. Dis.Vet.Public Health 49(1):
    25-30. (2002).
    Fire, A. Potent and specific genetic interference by double-stranded RNA in
    caenorhabditis elegans. Nature 391: 806-811 (1998)
    Green D. R., Reed J. C. Mitochondria and apoptosis. Science 281(5381):
    1309-1312. (1998).
    Guido K., Bruno D., Michele R. R. The mitochondrial death/life regulator in
    apoptosis and necrosis. Annu. Rev. Physiol. 60: 619-42. (1998).
    Guo Y. X., Wei T., Dallmann K., Kwang J. Induction of caspase-dependent
    apoptosis by betanodaviruses GGNNV and demonstration of protein alpha as
    an apoptosis inducer. Virology 308(1): 74-82. (2003).
    Hannon G. J. RNA interference. Nature 418: 244-251 (2002)
    Harrington E. A., Bennett M. R., Fandini A. , Evan G. I. Modulation of
    myc–induced apoptosis by specific cytokines. EMBO J.13: 3286-3295. (1994).
    Hasuwa H. , Kaseda K., Einarsdottir O., Okabe M. Small intergering RNA and
    gene silencing in transgenic mice and rats. FEBS Letters 532: 227-230. (2002)
    Hong J. R. , Wu J. L. VP5, a novel anti-apoptosis gene of the Bcl-2 family,
    regulates Mcl-1 viral protein expression .Virology 295(2): 217-29. (2002).
    Hong J. R. , Wu J. L. Induction of apoptosis death in cell via Bad gene
    expression by infectious pancreatic necrosis virus infection. Cell Death Differ.
    9: 113-124. (2002).
    Hong J. R. , Wu J. L. Molecular regulation of cellular apoptosis by fish
    infectious pancreatic necrosis virus infection.Virology (Review) 2: 151-160.
    (2002).
    Li H., Li W. X., Ding S. W. Induction and suppression of RNA silencing by an
    animal virus. Science 296: 1319-1321. (2002)
    Imajoh M, Sugiura H, Oshima S. Morphological changes contribute to
    apoptotic cell death and are affected by caspase-3 and caspase-6 inhibitors
    during red sea bream iridovirus permissive replication. Virology 322(2):
    220-30. (2004).
    Kerr J. F. R. Neglected pooprtunities in apoptosis research. Trends Cell. Biol.
    5: 55-57. (1995).
    Kerr J. F. R., Wyllie A. H., Currie A. R. Apoptosis : a basic biological
    phenomenon with wide ranging implications in tissue kinetics. Br.J. Cancer 26:
    1790-1794. (1972).
    Ball A. L. Nodavirus RNA Recombination. Virology 8: 95-100. (1997)
    Eckerle L. D., Albarino C. G., Ball L. A. Flock House virus subgenomic RNA3
    is replicated and its replication correlates with ransactivation of RNA2.
    Virology 317: 95-108. (2003)
    Dalla V. L., Negrisolo E., Patarnello P., Zanella L., Maltese C., Bovo G.,
    Colombo L. Sequence comparison and phylogenetic analysis of fish
    nodaviruses based on the coat protein gene. Arch Virol 146: 1125-1137. (2001)
    Lee Y. The nuclear RNase III Drosha initiates microRNA processing. Nature
    425: 415-419 (2003)
    Scherer L. J., Rossi J. Approaches for the sequence – specific knockdown of
    mRNA. Nature Biotec. 21: 1457-1465. (2003)
    Karbowski M. , Youle R. J. Dynamics of mitochondrial morphology in healthy
    cells and during apoptosis. Cell Death and Differentiation 10: 870-880. (2003)
    Miyagishi M., Taira K. U6 promoter-driven siRNAs with four uridine 31
    overhangs efficiently suppress targeted gene expression in mammalian cells.
    Nature biotec. 19: 497-500. (2002)
    Wetering M. V .D. , Oving I., Fong M., Brantjes H., Leenen D.V., Holstege
    C.P., Brummelkamp T. R., Agami R., Clevers H. Specific inhibition of gene
    expression using a stably integrated, inducible small – interfering – RNA
    vector. EMBO reports 4: 609-615. (2003)
    Carmell M. A., Zhang L., Conklin D. S., Hannon G. J., Rosenquist T. A.
    Germline transmission of RNAi in mice. Nature Structural Biology 10: 91-92.
    (2003)
    Arimoto M., Sato J., Maruyama K., Mimura G., Furusawa I. Effect of chemical
    and physical treatments on the inactivation of striped jack nervous necrosis
    virus. Aquaculture 143: 15-22. (1996)
    Mori K. I., Nakai T., Muroga K., Arimoto M., Mushiake K., Furusaea I.
    Properties of a new virus belonging to nodaviridae found in larval striped jack
    (Pseudocaranx dentex) with nervous necrosis. Virology. 187: 368-371. (1992)
    Mori K. I., Nakai T., Nagahara M., Muroga K., Mekuchi T., Kanno T. A viral
    disease in hatchery - reared larvae and juveniles of redspotted grouper. Gyobyo
    kenkyu. 26: 209-210. (1991)
    Munday B. L., Nakai T., Nguyen H. D. Antigenic relationship of the picorna -
    like virus of larval barramundi, lates calcarifer Bloch to the nodavirus of larval striped jacj, pseudocaranx dentex. Aust Vet J. 71: 384-385. (1994)
    Muroga K. Viral , bacterial disease in larval and juvenile marine fish and
    shellfish: a review. Fish Pathol. 30: 71-85. (1995)
    Nishizawa T., Furuhashi M., Nagai T., Nakai T., Muroga K. Genomic
    classification of fish nodaviruses by molecular phylogenetic analysis of the
    coat proteingene. Appl Environ Microbiol 63(4):1633-6. (1997)
    Oldstone M. B. A. How viruses escape from cytotoxic T lymphocytes :
    molecular parameters and players. Virology 234: 179-185. (1997).
    Kahana R., Kuznetzova L., Rogel A., Shemesh M., Hai D., Yadin H., Stram Y.
    Inhibition of foot-and-mouth disease virus replication by small interfering
    RNA. Journal of General Virology 85: 3213–3217. (2004)
    Ruvkun G. Glimpese of tiny RNA world. Science 294: 797-799 (2001)
    Samali A., Gorman A. M., Cotter. G. Apoptosis-he story so far-.Experientia.
    52(10-11): 933-941. (1996).
    Hammond S.M., Boettcher S., Caidy A. A., Kobayashi R., Hannon G. J.
    Argonaite2, a link between genetic and biochemical analyses of RNAi. Science
    293: 1146-1150. (2001)
    Kapadia S. B., Andersen A. B., Chisari F. V. Interference of hepatitis C virus
    RNA replication by short interfering RNAs. PNAS 100: 2014-2018. (2003)
    Sharp P. A. RNA interference-2001. Genes Dev. 15: 485-490 (2001)
    Bass B. L. Double-stranded RNA as a template for gene silencing. Cell 101:
    235-238 (2002)
    Chi S. C., Lin S. C., Su H. M., Hu W. W. Temperature effect on nervous
    necrosis virus infection in grouper cell line and in grouper larvae. Virus
    Research 63: 107-114. (1999)
    Stark G. R., Ian M. K., Bryan R. G. W., Robert H. S. , Robert D. S. How cells
    respond to interferons. Annu. Rev. Biochem. 67:227-64. (1998)
    Yokota T., Sakamoto N., Enomoto N., Tanabe Y., Miyagishi M., Maekawa S.,
    Yi L., Kurosaki M., Taira K., Watanabe M., Mizusawa H. Inhibition of
    intracellular hepatitis C virus replication by synthetic and vector – derived
    small interfering RNAs. EMBO reports 4: 602-608. (2003)
    Thornberry N. A., Lazebnik Y. Caspases: enemies within. Science 281(5381):
    1312-1316. (1998).
    Nishizawa T., Takano R., Muroga K. Mapping a neutralizing epitope on the
    coat protein of striped jack nervous necrosis virus. J. Gen. Virol. 80:
    3023-3027. (1999)
    Tuschl T. Expanding small RNA interference. Nat. Biotechnol.20: 446-448.
    (2002)
    Vaux D.L., Strasser A. The molecular biology of apoptosis. Pro. Nat. Acad. Sci.
    USA 933: 2239-2244. (1996).
    Bitko V., Musiyenko A., Shulyayeva O., Barik S. Inhibition of respiratory
    viruses by nasally administered si RNA. Nat. med. 11: 50-55. (2005)
    Voinnet O. RNA silencing as a plant immune system against viruses. TRENDS
    in Genetics 17: 449-459 (2001)
    Li W. X., Li H., Lu R., Li F., Dus M., Atkinson P., Brydon E.W.A., Johnson K.
    L., Garcia-Sastre A., Ball L. A., Palese P., Ding S. W. Interferon antagonist
    proteins of influenza and vaccinia viruses are suppressors of RNA silencing.
    PNAS 101: 1350-1355. (2004)
    Yoshikoshi K., Inoue K. Virus nervous necrosis in hatchery-reared larve and
    juveniles of Japanase parrotfish, Oplegnathus fasciatus . J. fish Dis. 13: 69-77.(1990).
    Zamore P. D., Tuschl T, Sharp P. A., Bartel D. P. RNAi: double-stranded RNA
    directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals.
    Cell 101: 25-33 (2000)

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