簡易檢索 / 詳目顯示

研究生: 林佳震
Lin, Chia-Chen
論文名稱: 整合重組酶聚合酶擴增及側流試紙之微流體平台用於檢測蝦白點病
An integrated recombinase polymerase amplification and lateral flow dipstick in microfluidic platform for shrimp white spot syndrome virus detection
指導教授: 傅龍明
Fu, Lung-Ming
學位類別: 碩士
Master
系所名稱: 工學院 - 工程科學系
Department of Engineering Science
論文出版年: 2021
畢業學年度: 109
語文別: 中文
論文頁數: 70
中文關鍵詞: 微流體生物晶片重組酶聚合酶擴增側流層析試紙
外文關鍵詞: Microfluidic Biochips, Recombinase Polymerase Amplification, Lateral Flow Dipstick
相關次數: 點閱:83下載:0
分享至:
查詢本校圖書館目錄 查詢臺灣博碩士論文知識加值系統 勘誤回報
  • 台灣漁業養殖是相當重要的經濟的一環,尤其具高經濟水產生物的疾病與治療被受重視,在全球漁業的型態轉變下,養殖漁業成為主要水產來源。在追求更高產量與獲利下,養殖產生幾項問題,如:高密度養殖、進口貿易種苗與親緣過近的繁殖育種,產生許多水產疾病爆發,加上氣候異常等環境因素導致疾病越來越容易爆發,造成經濟嚴重損害。若能在養殖現場即時與定時地進行檢測監控,即能有效的防範預防與即時治療,在未來生物醫療趨勢,必然以防範預防、即時檢測和即時治療為目標並利用整合微流體生物晶片分析技術來實現。本研究介紹了整合重組酶聚合酶擴增及側流試紙(RPA-LFD)於快速微流體生物晶片來檢測蝦白點病。檢測方法主要是利用RPA機制進行核酸檢測,結合LFD的終點檢測,將兩個步驟整合於微流體生物晶片。能在15分鐘內完成檢測及判讀,並隨著感染的嚴重程度不同,後續可以透過軟體讀取試紙條的灰階數值來進行分析。整個系統不僅能用於現場即時檢測,也可應用於其他生物疾病檢測。藉由本研究的整合系統更進一步的實現監控與現場檢測的需要,讓漁民能時刻維護養殖生物的健康,達到降低死亡率並提生產率之目的。

    Fish farming or pisciculture has important contribution in the economy of Taiwan. With the transformation of global fisheries, the main source of aquatic products comes from aquaculture sectors. In the pursuit of higher productivity and profits, aquaculture sectors have encountered with several problems. As a result, many aquatic disease outbreaks have occurred, and also the environmental factors, such as climate abnormalities have caused more diseases. These outbreaks are responsible for serious economic damage. If it can be detected periodically with real-time monitoring system in the breeding site, we can effectively prevent these outbreaks and also have the enough time for medical treatment. The future biomedical trend is bound for prevention, detection and immediate treatment for the immediate objectives using different advanced integrated microfluidic bio-chip analysis techniques. This study incorporates the integration of recombinase polymerase amplification and lateral flow dipstick (RPA-LFD) in a rapid microfluidic biochip to detect shrimp white spot syndrome virus. The different levels of the infection can be detected through the grayscale value of the customized strip and can be interpreted completely with a time less than 15 minutes by a software analysis tool.

    中文摘要 I SUMMARY II 致謝 XII 目錄 XIII 圖目錄 XV 表目錄 XVIII 縮寫說明 XIX 第一章 緒論 1 1.1前言 1 1.2研究動機 1 1.3研究的重要性 4 1.4研究目的 6 第二章 文獻回顧 8 2.1 微機電系統(Micro-Electro-Mechanics-System, MEMS) 8 2.2 微流體晶片技術與應用 9 2.3 雷射加工 11 2.3.1 CO2雷射(Carbon dioxide laser)原理 12 2.3.2 CO2雷射應用於加工PMMA晶片 13 2.4 核酸擴增檢測 14 2.4.1 聚合酶鏈反應(Polymerase Chain Reaction, PCR) 14 2.4.2環介導等溫擴增(Loop-Mediated Isothermal Amplification, LAMP) 16 2.4.3 重組酶聚合酶擴增(Recombinase Polymerase Amplification, RPA) 18 2.5 白點症病毒(White Spot Syndrome Virus, WSSV) 20 2.6 側流試紙(Lateral Flow Dipstick, LFD) 21 第三章 實驗與方法 23 3.1實驗材料與試劑藥品 23 3.1.1生物樣品 23 3.1.2藥品與試劑套件組 23 3.2實驗使用之儀器設備 24 3.3實驗流程 25 3.4核酸擴增晶片設計與製造 26 3.5核酸擴增機台開發與設計 31 第四章 結果與討論 37 4.1實驗設置 37 4.1.1內部控制(Internal Control, IC)因子確認 38 4.1.2核酸擴增檢測標準建立 40 4.1.3 RPA參數選擇與優化 45 4.2微流體生物晶片與自開發系統檢測之結果 50 4.2.1對不同蝦樣品進行健康與感染WSSV之樣品檢測 56 第五章 結論與展望 61 5.1結論 61 5.2展望 64 參考文獻 65

    [1] V. K. Verma, R. Yadava, Stochastic resonance in MEMS capacitive sensors, Sensors and Actuators B: Chemical 235 (2016) 583-602.
    [2] R. Feynman, Infinitesimal machinery, Journal of Microelectromechanical Systems 2(1993) 4-14.
    [3] A. T. Giannitsis, Microfabrication of biomedical lab-on-chip devices: A review, Estonian Journal of Engineering 17 (2011) 109.
    [4] C. D. Chin, V. Linder, S. K. Sia, Lab-on-a-chip devices for global health: Past studies and future opportunities, Lab on a Chip 7 (2007) 41-57.
    [5] D. R. Reyes, D. Iossifidis, P. A. Auroux, A. Manz, Micro total analysis systems:1. Introduction, theory, and technology, Analytical Chemistry 74 (2002) 2623-2636.
    [6] P. A. Auroux, D. Iossifidis, D. R. Reyes, A. Manz, Micro total analysis systems:2. Analytical standard operations and applications. Analytical Chemistry 74 (2002) 2637-2652.
    [7] FAO, The state of world fisheries and aquaculture 2020. Sustainability in action, Food and Agriculture Organization of the United Nations (2020).
    [8] J. L. Anderson, D. Valderrama, D. Jory, Shrimp production review, Global Aquaculture Alliance: Presentation Global Aquaculture Production Data and Analysis 1 (2016)1-50.
    [9] N. Ahmed, J. S. Diana, Threatening “white gold”: impacts of climate change on shrimp farming in coastal Bangladesh, Ocean & Coastal Management 114 (2015) 42-52.
    [10] 張知彬、王祖望,”ENSO現象與生物災害”,中國科學院院刊1 (1998) 34-38.
    [11] J. Huang, C. C. Hung, S. R. Kuang, Y. N. Chang, K. Y. Huang, C. R. Tsai, K. L. Feng, The prototype of a smart underwater surveillance system for shrimp farming, In 2018 IEEE International Conference on Advanced Manufacturing (ICAM), IEEE (2018) 177-180.
    [12] M. B. New, Farming freshwater prawns: a manual for the culture of the giant river prawn (Macrobrachium rosenbergii), Food & Agriculture Org (2002).
    [13] C. J. Jackson, N. Preston, M. A. Burford, P. J. Thompson, Managing the development of sustainable shrimp farming in Australia: the role of sedimentation ponds in treatment of farm discharge water, Aquaculture 226 (2003) 23-34.
    [14] C. L. Browdy, D. Bratvold, A. D. Stokesland, P. McIntosh, Perspective on the application of closed shrimp culture systems, Journal of Aquaculture Research (2001).
    [15] C. M. Ho, Y. C. Tai, Micro-electro-mechanical-systems (MEMS) and fluid flows, Annual Review of Fluid Mechanics 30 (1998) 579-612.
    [16] T. B. Christensen, C. M. Pedersen, K. G. Gröndahl, T. G. Jensen, A. Sekulovic, D. D. Bang, A. Wolff, PCR biocompatibility of lab-on-a-chip and MEMS materials, Journal of Micromechanics and microengineering 17 (2007) 1527.
    [17] H. Du, R. Bogue, MEMS sensors: past, present and future, Sensor Review (2007).
    [18] Y. Liu, E. Smela, N. M. Nelson, P. Abshire, Cell-lab on a chip: a CMOS-based microsystem for culturing and monitoring cells, The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, IEEE (2004) 2534-2537.
    [19] C. H. Lin, G. B. Lee, Y. H. Lin, G. L. Chang, A fast prototyping process for fabrication of microfluidic systems on soda-lime glass, Journal of Micromechanics and Microengineering 11 (2001) 726.
    [20] L. W. Luo, C. Y. Teo, W. L. Ong, K. C. Tang, L. F. Cheow, L. Yobas, Rapid prototyping of microfluidic systems using a laser-patterned tape, Journal of Micromechanics and Microengineering 17 (2007) N107.
    [21] X. Sun, B. A. Peeni, W. Yang, H. A. Becerril, A. T. Woolley, Rapid prototyping of poly (methyl methacrylate) microfluidic systems using solvent imprinting and bonding, Journal of Chromatography A 1162 (2007) 162-166.
    [22] H. Klank, J. P. Kutter, O. Geschke, CO2-laser micromachining and back-end processing for rapid production of PMMA-based microfluidic systems, Lab on a Chip 2 (2002) 242-246.
    [23] D. C. Duffy, J. C. McDonald, O. J. Schueller, G. M. Whitesides, Rapid prototyping of microfluidic systems in poly (dimethylsiloxane), Analytical Chemistry 70(1998) 4974-4984.
    [24] J. Kim, R. Surapaneni, B.K. Gale, Rapid prototyping of microfluidic systems using a PDMS/polymer tape composite, Lab on a Chip 9 (2009) 1290-1293.
    [25] A. Han, O. Wang, M. Graff, S. K. Mohanty, T. L. Edwards, K. H. Han, A. B. Frazier, Multi-layer plastic/glass microfluidic systems containing electrical and mechanical functionality, Lab on a Chip 3 (2003) 150-157.
    [26] K. Takeuchi, N. Takama, B. Kim, K. Sharma, O. Paul, P. Ruther, Microfluidic chip to interface porous microneedles for ISF collection, Biomedical Microdevices 21 (2019) 28.
    [27] J. Yin, Y. Suo, Z. Zou, J. Sun, S. Zhang, B. Wang, Y. Mu, Integrated microfluidic systems with sample preparation and nucleic acid amplification, Lab on a Chip 19 (2019) 2769-2785.
    [28] Z. Liao, Y. Zhang, Y. Li, Y. Miao, S. Gao, F. Lin, L. Geng, Microfluidic chip coupled with optical biosensors for simultaneous detection of multiple analytes: A review, Biosensors and Bioelectronics 126 (2019) 697-706.
    [29] M. Maeki, M. Tokeshi, Microfluidic Technologies and Platforms for Protein Crystallography, Applications of Microfluidic Systems in Biology and Medicine (2019) 27-51.
    [30] C. G. K. Malek, Laser processing for bio-microfluidics applications (part I), Analytical and Bioanalytical Chemistry 385 (2006) 1351-1361.
    [31] C. G. K. Malek, Laser processing for bio-microfluidics applications (part II), Analytical and Bioanalytical Chemistry 385 (2006) 1362-1369.
    [32] KEYENCE,“雷射的原理” (2020)。取自: https://www.keyence.com.tw/ss/products/marking/lasermarker/knowledge/principle.jsp.
    [33] C. K. N. Patel, Continuous-wave laser action on vibrational-rotational transitions of C O 2, Physical Review, 136 (1964) A1187.
    [34] FLUX,”雷射雕刻的原理” (2020)。取自: https://support.flux3dp.com/hc/zh-tw/articles/360001096275.
    [35] H. Becker, C. Gärtner, Polymer microfabrication technologies for microfluidic systems, Analytical and Bioanalytical Chemistry 390 (2008) 89-111.
    [36] M. I. Mohammed, M. P. Y. Desmulliez, The manufacturing of packaged capillary action microfluidic systems by means of CO 2 laser processing, Microsystem Technologies 19 (2013) 809-818.
    [37] Y. Huang, S. Liu, W. Yang, C. Yu, Surface roughness analysis and improvement of PMMA-based microfluidic chip chambers by CO2 laser cutting, Applied Surface Science 256 (2010) 1675-1678.
    [38] 先鋒科技,”光電光學光譜儀器雷射” (2020)。取自: http://www.teo.com.tw/prodDetail_print.asp?id=1219.
    [39] Y. I. Kim, J. Y. Cho, Gel-based proteomics in disease research: Is it still valuable?, Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1867 (2019) 9-16.
    [40] J. V. Jorrin-Novo, S. Komatsu, R. Sanchez-Lucas, L. E. R. de Francisco, Gel electrophoresis-based plant proteomics: Past, present, and future, Happy 10th anniversary Journal of Proteomics!, Journal of Proteomics 198 (2019) 1-10.
    [41] W. Xu, Z. Zhai, K. Huang, N. Zhang, Y. Yuan, Y. Shang, Y. Luo, A novel universal primer-multiplex-PCR method with sequencing gel electrophoresis analysis, PLoS One 7 (2012) e22900.
    [42] P. Wangman, S. Longyant, H. B. Utari, S. Senapin, C. Pengsuk, P. Sithigorngul, P. Chaivisuthangkura, Sensitivity improvement of immunochromatographic strip test for infectious myonecrosis virus detection, Aquaculture 453 (2016) 163-168.
    [43] L. Zeng, S. Song, Q. Zheng, P. Luo, X. Wu, H. Kuang, Development of a sandwich ELISA and immunochromatographic strip for the detection of shrimp tropomyosin, Food and Agricultural Immunology 30 (2019) 606-619.
    [44] X. Liu, Y. Guan, S. Cheng, Y. Huang, Q. Yan, J. Zhang, T. Liu, Development of a highly sensitive lateral immunochromatographic assay for rapid detection of Vibrio parahaemolyticus, Journal of Microbiological Methods 131 (2016) 78-84.
    [45] X. Sheng, Q. Tang, L. Zhang, X. Tang, J. Xing, W. Zhan, Development and application of a rapid semiquantitative immunochromatographic test strip to detect white spot syndrome virus. Aquaculture 495 (2018) 773-779.
    [46] B. Ma, J. Li, K. Chen, X. Yu, C. Sun, M. Zhang, Multiplex Recombinase Polymerase Amplification Assay for the Simultaneous Detection of Three Foodborne Pathogens in Seafood. Foods 9 (2020) 278.
    [47] X. Cao, L. Zhao, J. Zhang, X. Chen, L. Shi, X. Fang, L. Wang, Detection of viable but nonculturable Vibrio parahaemolyticus in shrimp samples using improved real-time PCR and real-time LAMP methods, Food Control 103 (2019) 145-152.
    [48] X. Chen, L. Qiu, H. Wang, P. Zou, X. Dong, F. Li, J. Huang, Susceptibility of Exopalaemon carinicauda to the Infection with Shrimp Hemocyte Iridescent Virus (SHIV 20141215), a Strain of Decapod Iridescent Virus 1 (DIV1), Viruses 387 (2019) 387.
    [49] K. Karthikeyan, R. Sudhakaran, Experimental horizontal transmission of Enterocytozoon hepatopenaei in post‐larvae of whiteleg shrimp, Litopenaeus vannamei, Journal of Fish Diseases 42 (2019) 397-404.
    [50] S. C. Sheu, M. T. Yu, Y. Y. Lien, M. S. Lee, Development of a specific isothermal nucleic acid amplification for the rapid and sensitive detection of shrimp allergens in processed food, Food Chemistry 332 (2020) 127389.
    [51] S. Zhou, M. Wang, M. Liu, K. Jiang, B. Wang, L. Wang, Rapid detection of Enterocytozoon hepatopenaei in shrimp through an isothermal recombinase polymerase amplification assay, Aquaculture 521 (2020) 734987.
    [52] T. J. Sullivan, A. K. Dhar, R. Cruz-Flores, A. G. Bodnar, Rapid, CRISPR-Based, Field-Deployable Detection Of White Spot Syndrome Virus In Shrimp, Scientific Reports 9 (2019) 1-7.
    [53] M. Fu, Y. Yang, C. Zhang, G. Chen, Y. Wang, Recombinase polymerase amplification combined with lateral-flow dipstick for rapid detection of Prorocentrum minimum, Journal of Applied Phycology (2020) 1-14.
    [54] X. Xia, Y. Yu, M. Weidmann, Y. Pan, S. Yan, Y. Wang, Rapid detection of shrimp white spot syndrome virus by real time, isothermal recombinase polymerase amplification assay, PLoS One 9 (2014) e104667.
    [55] C. F. Lo, J. H. Leu, C. H. Ho, C. H. Chen, S. E. Peng, Y. T. Chen, C. H. Wang, Detection of baculovirus associated with white spot syndrome (WSBV) in penaeid shrimps using polymerase chain reaction, Diseases of Aquatic Organisms 25 (1996) 133-141.
    [56] B. I. Eisenstein, The polymerase chain reaction: a new method of using molecular genetics for medical diagnosis, New England Journal of Medicine 322 (1990) 178-183.
    [57] K. B. Mullis, The unusual origin of the polymerase chain reaction, Scientific American 262 (1990) 56-65.
    [58] Enzoklo, Polymerase chain reaction, (2014). 取自: https://commons.wikimedia.org/wiki/File:Polymerase_chain_reaction.svg.
    [59] L. Garibyan, N. Avashia, Research techniques made simple: polymerase chain reaction (PCR), The Journal of Investigative Dermatology 133 (2013) e6.
    [60] T. Notomi, H. Okayama, H. Masubuchi, T. Yonekawa, K. Watanabe, N. Amino, T. Hase, Loop-mediated isothermal amplification of DNA. Nucleic Acids Research 28 (2000) e63-e63.
    [61] 梁成芝,”波仕特生物科技股份有限公司-LAMP 技術專刊” (2017)。取自: http://www.bio-protech.com.tw/upload/20171108061030.pdf.
    [62] K. Nagamine, T. Hase, T. Notomi, Accelerated reaction by loop-mediated isothermal amplification using loop primers, Molecular and Cellular Probes 16 (2002) 223-229.
    [63] S. J. Oh, B. H. Park, J. H. Jung, G. Choi, D. C. Lee, T. S. Seo, Centrifugal loop-mediated isothermal amplification microdevice for rapid, multiplex and colorimetric foodborne pathogen detection, Biosensors and Bioelectronics 75 (2016) 293-300.
    [64] Y. Mori, K. Nagamine, N. Tomita, T. Notomi, Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation, Biochemical and Biophysical Research Communications 289 (2001) 150-154.
    [65] J. Reboud, G. Xu, A. Garrett, M. Adriko, Z. Yang, E. M. Tukahebwa, J. M. Cooper, based microfluidics for DNA diagnostics of malaria in low resource underserved rural communities, Proceedings of the National Academy of Sciences 116 (2019) 4834-4842.
    [66] O. Piepenburg, C. H. Williams, D. L. Stemple, N. A. Armes, DNA detection using recombination proteins, PLOS Biology 4 (2006) e204.
    [67] M. Euler, Y. Wang, D. Heidenreich, P. Patel, O. Strohmeier, S. Hakenberg, M. Weidmann, Development of a panel of recombinase polymerase amplification assays for detection of biothreat agents, Journal of Clinical Microbiology 51 (2013) 1110-1117.
    [68] M. Euler, Y. Wang, O. Nentwich, O. Piepenburg, F. T. Hufert, M. Weidmann, Recombinase polymerase amplification assay for rapid detection of Rift Valley fever virus, Journal of Clinical Virology 54 (2012) 308-312.
    [69] M. Euler, Y. Wang, P. Otto, H. Tomaso, R. Escudero, P. Anda, M. Weidmann, Recombinase polymerase amplification assay for rapid detection of Francisella tularensis, Journal of clinical microbiology 50 (2012) 2234-2238.
    [70] A. M. King, E. Lefkowitz, M. J. Adams, E. B. Carstens (Eds.), Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses, Elsevier (2011).
    [71] H. Chou, C. Huang, C. Wang, H. Chiang, C. F. Lo, Pathogenicity of a baculovirus infection causing white spot syndrome in cultured penaeid shrimp in Taiwan, Diseases of Aquatic Organisms 23 (1995) 165-173.
    [72] 邱淑雍、李建霖,行政院農業委員會家畜衛生試驗所-水生動物疾病診斷輔助系統 (2015)。取自: https://aqua.nvri.gov.tw/disSheet.aspx?id=WHLFhMzUgMk%3D.
    [73] Y. Zhou, F. G. Pan, Y. S. Li, Y. Y. Zhang, J. H. Zhang, S. Y. Lu, Z. S. Liu, Colloidal gold probe-based immunochromatographic assay for the rapid detection of brevetoxins in fishery product samples, Biosensors and Bioelectronics 24 (2009) 2744-2747.
    [74] 睿嘉生物科技股份有限公司,核酸快速檢測試紙NARD (2020)。取自: https://www.regabio.com/zh-nard.

    無法下載圖示
    校外:不公開
    電子論文及紙本論文均尚未授權公開
    QR CODE