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研究生: 李石草
Ly, Thach-Thao
論文名稱: 真菌和植物源生物刺激劑透過重塑水稻的生長和防禦途徑以提高銅逆境耐受性
Fungal and Plant-Based Biostimulants Reprogram Growth and Defense Pathways to Improve Copper Tolerance in Rice
指導教授: 黃浩仁
Huang , Hao-Jen
學位類別: 博士
Doctor
系所名稱: 生物科學與科技學院 - 轉譯農業科學博士學位學程
Graduate Degree Program in Translational Agricultural Sciences
論文出版年: 2026
畢業學年度: 114
語文別: 英文
論文頁數: 100
外文關鍵詞: Fusarium verticillioides, microbial volatiles, Prunella vulgaris, plant extract, plant growth promotion, copper stress tolerance, Oryza sativa L. cv. TNG67
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  • Copper (Cu) is an essential micronutrient for plant growth; however, excessive accumulation of Cu resulting from the intensive use of Cu-based agrochemicals has become a major environmental concern, adversely affecting crop productivity and ecosystem sustainability. Developing eco-friendly strategies to mitigate Cu toxicity is therefore crucial for sustainable agriculture. This study evaluated fungal VOCs from Fusarium verticillioides and Prunella vulgaris extract (Pv) as biostimulants to improve copper (Cu) tolerance in rice (Oryza sativa L. cv. TNG67).
    Exposure to FvVCs promoted shoot elongation while inhibiting root growth. Transcriptomic analysis revealed that FvVCs induced tissue-specific gene expression patterns, including the upregulation of genes associated with cytokinin signaling, cell division, and ribosome biogenesis in shoots, whereas genes involved in ethylene biosynthesis, auxin synthesis, and abscisic acid signaling were upregulated in roots. Furthermore, pretreatment with FvVCs enhanced seedling survival under Cu stress and increased proline accumulation, suggesting that fungal volatiles function as signaling molecules that prime plant defense responses and improve stress adaptation.
    In other way, Pv treatment markedly improved plant growth and reduced Cu-induced damage. Transcriptomic and molecular analyses demonstrated that Pv stimulated the expression of genes involved in cell wall remodeling, Casparian strip formation, proline biosynthesis, deoxymugineic acid production, metallochaperones, and vacuolar and efflux transporters. These responses contributed to enhanced metal sequestration, reactive oxygen species detoxification, while limiting Cu uptake, thereby mitigating oxidative damage and improving Cu tolerance. LC–MS analysis identified several bioactive compounds, including caffeic acid, rosmarinic acid, and melatonin, which may contribute to the protective effects of Pv. Among the tested concentrations, 0.25% (w/v) Pv was the most effective in enhancing Cu tolerance.
    Overall, the results demonstrate that both fungal VOCs and P. vulgaris extract improve rice adaptation to Cu stress through coordinated physiological, anatomical, and molecular mechanisms. While FvVCs primarily enhance stress tolerance through defense priming and hormonal regulation, Pv mitigates Cu toxicity by restricting metal accumulation and promoting detoxification processes. These findings provide new insights into plant responses to biologically derived signaling compounds and biostimulants and highlight their potential as sustainable alternatives to conventional chemical inputs for improving crop performance in Cu-contaminated agricultural soils.

    Abstract I Acknowledgement III Chapter 1: General Introduction 1 1. Overview of copper toxicity in plants 1 2. Plant Responses to Heavy Metal-Induced Damage 2 3. Biostimulants in plant growth promotion and stress tolerance 4 2.1. Microbial volatile compounds 5 2.2. Plant-derived extracts 5 2.3. Aim of this study 6 Chapter 2: Materials and methods 7 2.1. Fungal isolation, culture medium, and identification 7 2.2. Extracts preparation 7 2.3. LC-MS/MS analysis of PV extract phytochemical constituents 7 2.4. Plant material and growth conditions 7 2.5. Effects of biostimulants on rice seedlings under copper stress 8 2.5.1 Volatiles released from Fusarium verticilioides 8 2.5.2 Prunella vulgaris extracts 8 2.5.2 Cell death detection 8 2.5.3 ROS detection 9 2.5.4 MDA measurement 9 2.6. Casparian strip observation 9 2.7. Element analysis 10 2.8. Effects of volatiles released by F. verticillioides on rice seedling growth 10 2.9. Proline determination 10 2.10. Plant RNA extraction and RNA sequencing 11 2.11. RT-qPCR 11 2.12. Statistical analysis 12 Chapter 3: The effect of Fusarium verticillioides - emitted volatiles on rice (Oryza sativa. L) growth and stress tolerance 13 3.1. Abstract 13 3.2. Introduction 13 3.3. Results 15 3.3.1. FvVCs ameliorates copper-induced cell death in TNG67 seedlings. 15 3.3.2. Element analysis 15 3.3.3. FvVCs alter growth of rice seedlings. 16 3.3.4. FvVC Priming Enhances Proline Accumulation Under Copper Stress 16 3.3.5. Transcriptomic Responses of Rice Seedlings to Fusarium verticillioides Volatile Compounds 16 3.3.6. FvVCs Promote Cell Cycle Progression 17 3.3.7. FvVCs Modulate Phytohormone Signaling Pathways 18 3.3.8. FvVCs Activate Defense-Related Pathways 18 3.4. Discussion 19 Chapter 4: Prunella vulgaris-Derived Biostimulant Enhances Copper Tolerance in Rice through Mitigation of Oxidative Damage and Maintenance of Ion Homeostasis 32 4.1. Abstract: 32 4.2. Introduction 33 4.3. Results 35 4.3.1. Chemical characterization of Prunella vulgaris extract. 35 4.3.2. Effect of Cu and Pv supplementation on TNG67 rice seedling growth 35 4.3.3. Pv modified global transcriptome changes in stressed rice roots. 36 4.3.4. Pv-induced cell wall reinforcement in rice roots under excess copper conditions 36 4.3.5. Pv modulate metal detoxification and homeostasis in copper-stressed rice seedlings 38 4.3.6. Effects of Pv on nutrient uptake in copper-stressed rice seedlings 39 4.4. Discussion 39 Chapter 5 Conclusion and Future perspectives 55 5.1 Conclusion 55 5.2 Future Perspectives 56 References 57 Appendixes 75

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