| 研究生: |
黃士誠 Huang, Shi-cheng |
|---|---|
| 論文名稱: |
布朗馬達在週期勢能下受非平衡溫度影響之運動分析 The Kinetic Analysis of Brownian Motor Suffered a Periodic Potential in Nonuniform Temperature |
| 指導教授: |
黃明哲
Huang, Ming-Jer |
| 學位類別: |
碩士 Master |
| 系所名稱: |
工學院 - 工程科學系 Department of Engineering Science |
| 論文出版年: | 2009 |
| 畢業學年度: | 97 |
| 語文別: | 中文 |
| 論文頁數: | 52 |
| 中文關鍵詞: | 非平衡溫度 、布朗運動 |
| 外文關鍵詞: | nonuniform temperature, Fokker-Planck equation, Brownian motion |
| 相關次數: | 點閱:73 下載:1 |
| 分享至: |
| 查詢本校圖書館目錄 查詢臺灣博碩士論文知識加值系統 勘誤回報 |
利用擾動分析來解釋分子馬達的運動行為,在之前已經有很多的研究。然而考慮一個非平衡溫度的條件是比較少被提出來的。因此提出一個擾動分析,而馬達的運動是處在一個非平衡溫度上。
本文使用Fokker-Planck equation 為運動方程式,解出在非平衡溫度下的或然率或機率流,再利用文獻[11] Robust 數值演算法計算切換過程中的運動模式。
採用MATLAB 7 軟體計算上述方程式和數值分析。求得在耦合一個週期性的勢能和一個非平衡溫度下的布朗運動行為,並與文獻[6]之結果比較,有很高的一致性。並討論平均速度和隨機性的影響。再利用改變振幅、溫差和粒子移動距離的模型,來探討每個模型對布朗馬
達運動的平均速度和隨機性的影響。
There are many researches regarding using fluctuation analysis to explain the movement of molecular motor. However there are not so many studies being presented by considering the condition of nonuniform temperature. Therefore provide a fluctuation analysis with the motor
movement which is running under nonuniform temperature.
The Fokker-Planck equation is the governing equation in this paper,it can be used to slove the probability and the probability fiux and it also can be used on calculating working model with potential energy switches between on and off state by Robust numerical algorithm in the reference[11].
This paper used MATLAB7.0 to calculate the equations and the numerical algorithm to analyze.The behavior of Brownian motion in the case of coupling a periodic potential to a nonuniform temperature foeld is further investigated.The results of this study are highly consistent with this of previous studies for the reference[6].Discuss the average velocities and randomness of Brownian motions.By changing the molds of amplitude,temperature difference and particle moves distance to discussthe effects of molds which are average velocities and randomness to Brownian motor kinetic.
1. Astumian, R. D. and Bier, M., Mechanochemical Coupling of the Motion of Molecular Motors to ATP Hydrolysis, Biophysical Journal, 70, 637-653 (1996).
2Astumian, R. D. Thermodynamics and Kinetics of a Brownian Motor.Science. 276, 917-922 (1997).
3. Keller, D. and Bustamante C., The Mechanochemistry of
Molecular Motors, Biophysical Jouranl, 78, 541-556 (2000).
4. Elston, T. C., A Marcoscopic Description of Biomolecular
Transport, J. Math. Biol, 41, 189-206 (2000).
5. Le, B. Q., Wang, X. J, Liu, G. T., Wen, D. H., Xie, H. Z., Chen, W., and Liu L. G., Efficiency optimization in a correlation ratchet with asymmetric unbiased fluctuations, Physical Review E. 68, 061105 (2003).
6. Asfaw, M. and Bekele, M., Current maximum Power and Optimized Efficiency of a Brownian Heat Engine, Eur. Phys. J. B 38,457 (2004).
7. Ai, B. Q., Wang, L., and Liu, L. G., Transport reversal in a thermal ratchet, Physical Review E, 72, 031101 (2005).
8. Ai, B. Q., Wang, X. J., Liu, G. T., Wen, D. H., Xie, H. Z., Chen, W.and Liu L. G., Efficiency optimization in a correlation ratchet with asymmetric unbiased fluctuations, Physical Review E, 68, 061105,(2003).
9. Reimann, P., Brownian motors: noisy transport far from
equilibrium, Phys. Rep., 361, 57-265 (2002).
10. Ai, B. Q., Wang, L., and Liu, L. G., Brownian micro-engines and refrigerors in a spatially periodic temperature field: Heat flow and performances, Physics Letters A. 352, 286–290 (2006).
11. Wang, H., Peskin, C. S., and Elston, T. C., A Robust Numerical Algorithm for Studying Biomolecular Transport Processes, J. theor. Biol. 221,491-511 (2003)
12. Oster, G. & Wang, H. How protein motors convert chemical energy into mechanical work. In Molecular Motors, M. Schliwa, ed. 207-228, Wiley-VCH (2002).
13. Parrondo, J. M. R., Blanco, J. M., Cao, F. J. and Brito, R., Efficiency of Brownian Motors. Europhys. Lett. 43, 248-254 (1998).
14. Kelly, T. R., Tellitu, I., and Sestelo, J. P., In search of molecular ratchets. Angew. Chem. Int. Ed. Engl, 36, 1866-1868 (1997).
15. Sebastian, K. L., Molecular ratchets: verification of the principle of detailed balance and the second law of dynamics, Phys. Rev. E, 61
1937 (2000).
16. Oster, G. and Wang, H., Reverse engineering a protein: the mechano chemistry of ATP synthase., Biochim. Biophys. Acta 1458, 482-510(2000).
17. Barbara J. Gabry, Karol Pesz, and Stanis law J. Bartkiewicz,Brownian motion molecular motors and ratchets, Physica A: 2Statistical and Theoretical Phyaics, 336, 112-122 (2003).
18. Downton M. T., and Zuckermann M. J., Performance characteristics of Brownian motors, CHAOS 15, 026111 (2005).
19.賴冠旭, 生物分子馬達運動分析, 國立成功大學工程科學系碩士
論文, (2006).
20.楊秉凡, 切換速率對布朗馬達運動分析, 國立成功大學工程
學系碩士論文, (2007).
21.陳相慶,布朗馬達於變溫下之運動分析,國立成功大學工程科學
系碩士論文,(2007).
22.鄭羽成,布朗馬達於週期變溫環境下受週期外力作用下運動分析,國立成功大學工程科學系碩士論文,(2008).
23.蕭禎源,布朗馬達在兩狀態間切換之運動分析,國立成功大學工程
科學系碩士論文,(2008).