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研究生: 鄭玉南
Trinh, Ngoc-Nam
論文名稱: 環境逆境反應中之囊泡運輸分子特性研究
MOLECULAR CHARACTERIZATION OF VESICLE TRAFFICKING IN ENVIRONMENTAL STRESS RESPONSE
指導教授: 黃浩仁
Huang, Hao-Jen
學位類別: 博士
Doctor
系所名稱: 生物科學與科技學院 - 生命科學系
Department of Life Sciences
論文出版年: 2013
畢業學年度: 102
語文別: 英文
論文頁數: 180
中文關鍵詞: 顯性抑制重金屬逆境突變NbExo70Nicotiana benthamianaOryza sativa過氧化物鹽逆境VIGS
外文關鍵詞: dominant negative, heavy metal stress, mutant, NbExo70, Nicotiana benthamiana, Oryza sativa, reactive oxygen species, salt stress, VIGS
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  • 植物面對重金屬逆境的反應,含括複雜的機制及接受重金屬訊息而活化的訊息傳遞途徑、生合成逆境相關的蛋白質及訊息傳遞分子,以及專一的重金屬反應相關基因轉錄活化以應對逆境。六價鉻[Cr(VI)]對於一般植物而言是一種非生長必需的金屬,當濃度過高時則會造成毒害。然而目前對於鉻影響細胞功能及基因表現的訊息傳遞途徑及分子機制所知有限。在本篇研究中,我們證實鉻會誘導細胞內的過氧化物(ROS)產生以及鈣離子(Ca2+)累積。透過微陣列晶片分析,我們研究水稻根部中的全面性基因轉錄變化。由鉻誘導水稻根部內基因表現特性顯示離層酸、乙稀及茉莉酸訊息傳遞與生合成相關基因有表現量增加的現象,而吉貝素則有失去活性的情形。在鉻逆境中,訊息分子例如蛋白質磷酸化酵素(含未知功能區域26)、類受質胞質磷酸化酵素、類LRR10磷酸化酵素種類2及蛋白質去磷酸化酵素2C,以及轉錄分子例如WRKY及apetala2/乙稀反應因子,其基因表現量特別明顯。特別的是,一些參與囊泡運輸的基因也是受鉻刺激而大量表現。當預先以囊泡運輸抑制劑 (brefeldin A)處理水稻根部時,會有效的減少鉻所誘導的ROS產生。
    為了暸解囊泡運輸在重金屬逆境中的角色,我們挑選參與囊泡運輸的基因以進行功能確認,NbExo70啟動子/GUS報導蛋白活性確實會受六價鉻或二價銅逆境所誘導。藉由共軛焦顯微鏡,我們知道NbExo70蛋白在細胞中的位置於細胞膜及細胞質。利用病毒誘導基因靜默(VIGS)抑制參與囊泡運輸的基因NbExo70,顯示重金屬誘導的ROS產生,需要囊泡運輸的參與。此外,當大量表現缺乏區域D(其作用為影響NbExo70膜交互作用)的NbExo70時,一樣會顯著地降低重金屬與鹽誘導植物產生ROS。特別的是,NbExo70的靜默與區域移除突變會增加植物的重金屬與鹽逆境容忍度。這些結果提供我們對於植物面對環境逆境時,其訊息傳遞、基因調控及囊泡運輸所扮演的角色更多暸解。

    The plant response to heavy metal stress involves a complicated mechanism and signal transduction network that are activated by sensing the heavy metal, and are characterized by the synthesis of stress-related proteins and signaling molecules, and the finally the transcriptional activation of specific metal-response genes to counteract the stress. Hexavalent chromium [Cr (VI)] is a non-essential metal for normal plants and is toxic to plants at high concentrations. However, little is known about the signaling pathways and molecular mechanisms of its action on cell function and gene expression. In this study, we demonstrated that Cr (VI) induced intracellular reactive oxygen species (ROS) production and Ca2+ accumulation. We investigated global transcriptional changes in rice roots by microarray analysis. Gene expression profiling of Cr (VI)-treated rice roots revealed upregulated signaling and biosynthesis of abscisic acid, ethylene, and jasmonic acid and inactivation of gibberellic acid. Genes encoding signaling components such as the protein kinases domain of unknown function 26, receptor-like cytoplasmic kinase, LRK10-like kinase type 2, and protein phosphatase 2C as well as transcription factors WRKY and apetala2/ethylene response factor were predominant during Cr (VI) stress. Specially, several genes involved in vesicle trafficking were also upregulated. Pre-treating rice roots with a vesicle trafficking inhibitor, brefeldin A, effectively reduced Cr (VI)-induced ROS production.
    To find out the role of vesicle trafficking in heavy metal stress response, genes involved in vesicle trafficking were subjected to functional characterization. NbExo70 promoter/GUS reporter activity was strongly induced by Cr (VI) or Cu (II) stress. Confocal microscopy indicated that NbExo70 protein is located both at the plasma membrane and within the cytoplasm. Suppression of the vesicle trafficking-related gene, NbExo70, by virus-induced gene silencing (VIGS) strategies revealed that vesicle trafficking is required for mediation of heavy metal-induced ROS production. Furthermore, overexpression of dominant negative form of NbExo70 domain D, which may result in disrupting the NbExo70 membrane interaction, also showed a significantly decrease in heavy metal and salt induced-ROS production in plants. Specially, the silencing and dominant negative mutation of NbExo70 exhibited an increased tolerance to heavy metal and salt stress in plants. These results provide insights into understanding the molecular mechanisms in signaling pathways, transcriptional regulation and the role of vesicle trafficking in response to environmental stress in plants.

    中文摘要 I ABSTRACT III ACKNOWLEDGEMENTS V ABBREVIATIONS XIII Chapter 1 General Introduction 1 1.1. Toxic effect of heavy metal stress on plant growth 2 1.2. The role of reactive oxygen species in heavy metal stress 3 1.3. Phytohormones in heavy metal response 4 1.4. Vesicle trafficking in plant 6 1.5. Virus-induced gene silencing (VIGS) 9 1.6. Aims of study 11 Chapter 2 Materials and Methods 13 2.1. Plant materials and growth conditions 14 2.2. Methods 14 2.2.1. Root length determination 14 2.2.2. Expression and silencing constructs 15 2.2.3. In situ detection of ROS, Ca2+ and lipid peroxidation 17 2.2.4. Isolation and purification of total RNA 18 2.2.5. Microarray preparation and analysis 18 2.2.6. Expression analysis using semi quantitative RT-PCR 19 2.2.7. Real-time PCR analysis 20 2.2.8. Treatment of rice roots with vesicle-trafficking inhibitors 21 2.2.9. In situ detection of reactive oxygen species 21 2.2.10. VIGS in Nicotiana benthamiana 21 2.2.11. Agrodrench-mediated VIGS in N. benthamiana roots 22 2.2.12. Leaf disks Cr (VI) and salt stress bioassay 23 2.2.13. Transient expression of fluorescent proteins in tobacco leaves 24 2.2.14. Immunological detection for GFP- fused protein 24 2.2.15. Plant transformation 25 2.2.16. Histochemical detection of GUS activity 27 2.2.17. Determination of Cu accumulation in N. benthamiana leaves 27 Chapter 3 Transcriptome Profiling Reveals a Major Role for Exo70 in Cr (VI) Stress Tolerance in Rice Seedlings 29 3.1. Abstract 30 3.2. Introduction 31 3.3. Results 34 3.3.1. Effect of Cr (VI) stress on growth of rice seedlings 34 3.3.2. Cr (VI) effect on ROS production, Ca2+ accumulation and ROS-induced lipid peroxidation 34 3.3.3. Microarray based expression profiling 35 3.3.4. Expression profiles of genes associated with protein kinase and phosphatase 35 3.3.5. Analysis of genes related to TFs 36 3.3.6. Expression pattern of genes involved in phytohormone pathways 37 3.3.7. Expression profiles of vesicle trafficking-related genes 37 3.3.8. Verification of microarray data by semi-quantitative RT-PCR and qRT-PCR 38 3.4. Discussion 41 Chapter 4 Functional Analysis of Exo70 in Response to Environmental Stresses 69 4.1. Abstract 70 4.2. Introduction 71 4.3. Results 76 4.3.1. Role of vesicle trafficking in metal induced-ROS production in rice roots 76 4.3.2. Isolation of a full-length cDNA encoding NbExo70 from N. benthamiana 76 4.3.3. NbExo70 promoters differentially respond to heavy metals stress 77 4.3.4. Subcellular localization of NbExo70 78 4.3.5. Functional analysis of Exo70 gene by VIGS in the leaves and roots of N. benthamiana plants 79 4.3.6. Overexpression of dominant negative nbexo70 domain D mutant inhibits heavy metal-induced ROS production 81 4.3.7. Effect of Cu treatment on Cu accumulation in N. benthamiana leaves 83 4.3.8. Dominant negative mutant of NbExo70 domain D exhibit enhanced tolerance to salt stress 83 4.4. Discussion 86 Chapter 5 Conclusions and Future Perspectives 126 5.1. Conclusions 127 5.2. Future perspectives 128 REFERENCES 129 APPENDIXES 150 CURRICULUM VITAE 179

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