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研究生: 王宏業
Ong, Hong-Ye
論文名稱: 點帶石斑干擾素γ與γrel基因的功能特性分析
Characterization of Functions of Interferon Gamma and Gamma-relative Genes in Orange-spotted Grouper (Epinephelus coioides)
指導教授: 陳宗嶽
Chen, Tzong-Yueh
學位類別: 碩士
Master
系所名稱: 生物科學與科技學院 - 生物科技與產業科學系
Department of Biotechnology and Bioindustry Sciences
論文出版年: 2020
畢業學年度: 108
語文別: 英文
論文頁數: 99
中文關鍵詞: 第二型干擾素點帶石斑魚野田病毒
外文關鍵詞: IFN-γ, orange-spotted grouper, nodavirus
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  • 過去研究發現第二型干擾素 (IFN-γ)在硬骨魚類中發現了第二個第二型干擾素而在此簡稱IFN-γrel 。現在因IFN-γ與IFN-γrel的功能差異與性能並不瞭解,因此本研究將探討IFN-γ與IFN-γrel在抗病毒和細菌中扮演的角色。本實驗將選殖出點帶石斑魚osgIFN-γ和osgIFN-γrel (orange-spotted grouper IFN-γ and IFN-γrel) 之序列並有被感染神經壞死病毒的點帶石斑魚作爲試驗材料來探討osgIFN-γ與osgIFN-γrel 在硬骨魚類的抗病毒免疫系統的重要性與兩者之間的差異。利用即時聚合酶鏈式反應測試(Real-Time PCR) ,在受到poly I:C刺激後,osgIFN-γ 基因表現有上升的現象,而在osgIFN-γrel在受到LPS刺激後,基因表現有上升的現象。此外,osgIFN-γ在NNV病毒的攻擊下有強烈的反應,而osgIFN-γrel卻無顯著差異。本研究中也應用突變Mx 的啟動因子裡的GAS 序列來探討IFN-γ與IFN-γrel 對GAS的依賴性,結果顯示只要GAS被突變後IFN-γ與IFN-γrel 對活化Mx的效率明顯下滑。因此本實驗證明了IFN-γ在抗病毒中扮演更重要的角色而IFN-γrel在抗細菌中扮演更重要的角色以及GAS對IFN-γ與IFN-γrel活化Mx的三個啟動因子的重要性。研究結果將對於往後點帶石斑魚在野田病毒的防禦上具有參考價值。

    The pass researches of the teleost fish type-II interferons (IFN-γ) founds a second family members of type-II interferons and named IFN-γrel. While the antiviral response of IFN-γ are well characterized, the antiviral response of IFN-γ and IFN-γrel in teleost fish are still not yet fully characterized. Therefore, this study aims to cloned orange-spotted grouper IFN-γ (osgIFN-γ) and IFN-γrel (osgIFN-γrel) sequences and uses NNV infected specimens to study the functionality differences between both IFN-γ with IFN-γrel. By using real-time PCR methods, under the poly I:C stimulations, osgIFN-γ was highly stimulated meanwhile under LPS stimulations the osgIFN-γrel was significantly stimulated. Aside the immunostimulants, under the NNV infection, the osgIFN-γ was significantly more upregulated in contrast of osgIFN-γrel. This study also mutated the GAS sequence found in Mx promoters to study the dependences of osgIFN-γ and osg-IFN-γrel toward it. The results shows that as long as the GAS sequence is mutated, the stimulation of Mx by osgIFN-γ and osgIFN-γrel are significantly less responsive. The results of this study have find that osgIFN-γ and osgIFN-γrel played a different role in pathogen invasion with osgIFN-γ played a more crucial role in anti-viral response, while osgIFN-γrel played a more crucial role in anti-bacterial response. Aside this, this study also found that the important of GAS sequences in activation of Mxs proteins by IFN-γ and IFN-γrel. All of these results would contribute to the prevention of nodavirus infection in orange-spotted grouper for future days.

    Chinese Abstract (中文摘要)........................... I Abstract............................................. II Acknowledgements..................................... VI Table of Contents.................................... VII Contents of Tables................................... XI Contents of Figures.................................. XII Abbreviation List.....................................XV 1. Research Background............................... 1 1-1 Aquaculture ..................................... 1 1-2 Orange-spotted Grouper (Epinephelus coioides).... 2 1-3 Diseases of orange-spotted grouper .............. 3 1-4 Nervous necrosis virus .......................... 3 1-5 Teleost fish immune system....................... 5 1-6 Teleost fish interferon system .................. 8 1-7 Teleost fish type-I interferon........................................... 9 1-8 Teleost fish type-II interferon........................................... 10 1-9 Interferon gamma relative........................ 12 1-10 Interferon induced antiviral activities........................................... 14 1-11 Antiviral Mx protein............................ 15 1-12 Mx genes activation mechanism............................................ 16 1-13 Different Mx proteins and their biological functions............................................ 18 1-14 Research objectives............................. 19 2. Materials and Methods............................. 20 2-1 RNA extraction................................... 20 2-2 First strand cDNA synthesis...................... 21 2-3 Preparation of agarose gel and PCR............... 21 2-4 PCR purification......................................... 22 2-5 TA cloning.............................................. 23 2-6 Transformation................................... 23 2-7 Colony PCR....................................... 24 2-8 Plasmid Extraction........................................... 25 2-9 Restriction Enzyme Digestion..................... 26 2-10 Real time PCR................................... 26 2-11 Preparation of primary head kidney cell......... 27 2-12 Interferons stimulation on primary head kidney cells and GF-1 cell lines............................ 28 2-13 Cell transfection............................... 28 2-14 Luciferase assay Mxs promoter in GF-1 cells..... 29 2-15 Western blot analysis........................... 29 2-16 Site-mutagenesis of GAS sequences on Mxs promoters............................................ 30 3. Results........................................... 31 3-1 Molecular cloning and nucleotide sequencing of IFN-γ and IFN-γrel gene.............................. 31 3-2 Tissue distribution and transcription pattern of IFN-γ and IFN-γrel................................... 32 3-3 Temporal expression of IFN-γ and IFN-γrel in response to viral mimic, poly I:C and bacterial mimic LPS ................................................. 33 3-4 Induced expression of osgIFN-γ and osgIFN-γrel after NNV challenge.................................. 33 3-5 Protein expression and purification of IFN-γ and IFN-γrel......................................... 34 3-6 Concentration test of IFN-γ and IFN-γrel in stimulation of Mxs................................... 35 3-7 Temporal expression of Mxs by osgIFN-γ and osgIFN-γrel stimulation..................................... 35 3-8 Effect of Mx promoter’s regions on osgIFN-γ and osgIFN-γrel stimulation.............................. 37 3-9 Effects of temperature on the osgIFN-γ and osgIFN-γrel stimulation of various Mxs Promoter............. 39 4. Discussions....................................... 40 4-1 Bioinformatic analysis of IFN-γ and IFN-γrel..... 40 4-2 Tissues distribution of IFN-γ and IFN-γrel....... 42 4-3 IFN-γ and IFN-γrel responses toward pathogenic invasion............................................. 42 4-4 IFN-γ and IFN-γrel influences Mxs................ 43 4-5 IFN-γ and IFNγrel effect on Mxs regulations ..... 46 4-6 Conclusions...................................... 48 References........................................... 49 Table................................................ 63 Figures.............................................. 66

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